RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TAAR1Q96RJ0 339 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 PICK1Q9NRD5 415 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 KCNH7Q9NS40 1196 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 ZNF112Q9UJU3 913 aa17.29■□□□□ 0.36
CLN3-251ENST00000636853 A0A1W2PQJ5 194 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 KIF5CO60282 957 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 PTPRAP18433 802 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 RPS6P62753 249 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 ADAM9Q13443 819 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 B3GNT9Q6UX72 402 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 EPM2AIP1Q7L775 607 aaPredicted RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 APOBEC3FQ8IUX4 373 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 ZNF280CQ8ND82 737 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 BANK1Q8NDB2 785 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 PURBQ96QR8 312 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 PRDM10Q9NQV6 1147 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 ZNHIT6Q9NWK9 470 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 GGA3Q9NZ52 723 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 ZBED4O75132 1171 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 EIF2AK2P19525 551 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 ARHGAP25P42331 645 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 MRPS9P82933 396 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 EPHA7Q15375 998 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 ELF2Q15723 593 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 KNOP1Q1ED39 458 aaKnown RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 ZNF569Q5MCW4 686 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 KRT26Q7Z3Y9 468 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 ZNF397Q8NF99 534 aaPredicted RBP17.28■□□□□ 0.36
CLN3-251ENST00000636853 TRERF1Q96PN7 1200 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 GPRC5DQ9NZD1 345 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 ZHX2Q9Y6X8 837 aa17.28■□□□□ 0.36
CLN3-251ENST00000636853 VWA5AO00534 786 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 GCNT3O95395 438 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 NR2F2P24468 414 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 KCNMA1Q12791 1236 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 ARHGAP27Q6ZUM4 889 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 C1orf186Q6ZWK4 172 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 RIT2Q99578 217 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 ARID3AQ99856 593 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 LXNQ9BS40 222 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 TRIM10Q9UDY6 481 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 TFR2Q9UP52 801 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 RIPK3Q9Y572 518 aa17.27■□□□□ 0.36
CLN3-251ENST00000636853 EPS15P42566 896 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 HIRAP54198 1017 aaPredicted RBP17.27■□□□□ 0.35
CLN3-251ENST00000636853 HMGCS2P54868 508 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 CBX1P83916 185 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 GHRHRQ02643 423 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 KCNA1Q09470 495 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 EDRF1Q3B7T1 1238 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 TKFCQ3LXA3 575 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 GPIHBP1Q8IV16 184 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 KCTD17Q8N5Z5 321 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 CARD6Q9BX69 1037 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 NHEJ1Q9H9Q4 299 aaPredicted RBP17.27■□□□□ 0.35
CLN3-251ENST00000636853 AS3MTQ9HBK9 375 aa17.27■□□□□ 0.35
CLN3-251ENST00000636853 PARP14Q460N5 1801 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 CETN3O15182 167 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 FAM13AO94988 1023 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 GNA14O95837 355 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 HERVK_113P62684 666 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 MAP3K9P80192 1104 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 PRKG1Q13976 671 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 ERCC6LQ2NKX8 1250 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 PCNX4Q63HM2 1172 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 NSMFQ6X4W1 530 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 PPP4R3CPQ6ZMV5 832 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 TRIM59Q8IWR1 403 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 ZC3H3Q8IXZ2 948 aaKnown RBP17.26■□□□□ 0.35
CLN3-251ENST00000636853 MYCT1Q8N699 235 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 NACC1Q96RE7 527 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 UBIAD1Q9Y5Z9 338 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 BCRP11274 1271 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 MYCLP12524 364 aaPredicted RBP17.26■□□□□ 0.35
CLN3-251ENST00000636853 ITGB3BPQ13352 177 aaPredicted RBP17.26■□□□□ 0.35
CLN3-251ENST00000636853 SLC35F6Q8N357 371 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 AGO4Q9HCK5 861 aaKnown RBP17.26■□□□□ 0.35
CLN3-251ENST00000636853 OGFRQ9NZT2 677 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 TRAF3IP3Q9Y228 551 aa17.26■□□□□ 0.35
CLN3-251ENST00000636853 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-251ENST00000636853 POLR2AP24928 1970 aaKnown RBP17.25■□□□□ 0.35
CLN3-251ENST00000636853 DHX15O43143 795 aaKnown RBP17.25■□□□□ 0.35
CLN3-251ENST00000636853 PLEKP08567 350 aaPredicted RBP17.25■□□□□ 0.35
CLN3-251ENST00000636853 NMT1P30419 496 aaKnown RBP17.25■□□□□ 0.35
CLN3-251ENST00000636853 MARSP56192 900 aaKnown RBP17.25■□□□□ 0.35
CLN3-251ENST00000636853 PGM5Q15124 567 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 TAF3Q5VWG9 929 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 RNF207Q6ZRF8 634 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 MIER3Q7Z3K6 550 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 IKZF4Q9H2S9 585 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 JADE2Q9NQC1 790 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 MRFAP1Q9Y605 127 aa17.25■□□□□ 0.35
CLN3-251ENST00000636853 COL11A1P12107 1806 aaPredicted RBP17.25■□□□□ 0.35
CLN3-251ENST00000636853 GAP43P17677 238 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 MTMR1Q13613 665 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 RRAGAQ7L523 313 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 MNS1Q8NEH6 495 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 NEK11Q8NG66 645 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 IQCDQ96DY2 449 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 KLRG1Q96E93 195 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms