RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 BMP6P22004 513 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 FXR1P51114 621 aaKnown RBP eCLIP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 MAPK8IP2Q13387 824 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 NELFCDQ8IXH7 590 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 BBXQ8WY36 941 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 BHMT2Q9H2M3 363 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 TMEM260Q9NX78 707 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 TACC3Q9Y6A5 838 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP27XA6NNY8 438 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 GDF11O95390 407 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 MYZAPP0CAP1 466 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 GUCY2CP25092 1073 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 MAN1A1P33908 653 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 AP3M2P53677 418 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 EPHB4P54760 987 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SURF1Q15526 300 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 WDR44Q5JSH3 913 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 RAB17Q9H0T7 212 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 NRBP2Q9NSY0 501 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 ANKEF1Q9NU02 776 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 LDHAP00338 332 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 MFAP3P55082 362 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 STRN3Q13033 797 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 WDR93Q6P2C0 686 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 RUFY4Q6ZNE9 571 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SPATS2Q86XZ4 545 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 GPRASP2Q96D09 838 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 UBE2Q2LH0YL09 131 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 CES2O00748 559 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 CCND2P30279 289 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 LONRF2Q1L5Z9 754 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 PAPD7Q5XG87 772 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SLFN12LQ6IEE8 588 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 FAM167AQ96KS9 214 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 MTRF1LQ9UGC7 380 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 AMFRQ9UKV5 643 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 ATF5Q9Y2D1 282 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L15C9J2P7 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L13C9JLJ4 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L11C9JVI0 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L18D6R9N7 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L22D6RA61 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L17D6RBQ6 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L19D6RCP7 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L20D6RJB6 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 E9PMD0 336 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 NR3C1P04150 777 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 H2AFXP16104 143 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 CAP2P40123 477 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 QARSP47897 775 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 NPEPPSP55786 919 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 PSMC5P62195 406 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L24Q0WX57 530 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SLC18A3Q16572 532 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 USP17L6PQ6QN14 398 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 RAD9BQ6WBX8 426 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 ZNF507Q8TCN5 953 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 DHX38Q92620 1227 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 EXOC4Q96A65 974 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 PNMA5Q96PV4 448 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SEPT11Q9NVA2 429 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 TRIM49BA6NDI0 452 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 CLK2P49760 499 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 CLCN6P51797 869 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 NNTQ13423 1086 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 BMT2Q1RMZ1 405 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 KCNV1Q6PIU1 500 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 A0A087X0B3 334 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 ENPEPQ07075 957 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SMC1AQ14683 1233 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 NSUN6Q8TEA1 469 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 GTF3C2Q8WUA4 911 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 BLOC1S4Q9NUP1 217 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 RREB1Q92766 1687 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 GOLGA8KD6RF30 607 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 VIL1P09327 827 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 CYP11B2P19099 503 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 EIF4A3P38919 411 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 SNX16P57768 344 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 DMP1Q13316 513 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 ARHGEF16Q5VV41 709 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 LDHDQ86WU2 507 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 ARID3AQ99856 593 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 EIF2AK1Q9BQI3 630 aaKnown RBP4.98□□□□□ -1.61
SCN1A-210ENST00000635776 KIAA1683Q9H0B3 1180 aa4.98□□□□□ -1.61
SCN1A-210ENST00000635776 MAPK13O15264 365 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 C21orf2O43822 256 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 ICAM1P05362 532 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 PSAPP07602 524 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 KCNH2Q12809 1159 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 SEL1L2Q5TEA6 688 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 LIN9Q5TKA1 542 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 FAM160B1Q5W0V3 765 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 CC2D1AQ6P1N0 951 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-210ENST00000635776 FBXO38Q6PIJ6 1188 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 EIF1ADQ8N9N8 165 aaKnown RBP4.97□□□□□ -1.61
SCN1A-210ENST00000635776 FNBP1Q96RU3 617 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 MXRA8Q9BRK3 442 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 PARD6BQ9BYG5 372 aa4.97□□□□□ -1.61
SCN1A-210ENST00000635776 SCN7AQ01118 1682 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms