RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 POLD1P28340 1107 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 GJA4P35212 333 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNF76P36508 570 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 RPS19P39019 145 aaKnown RBP1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 ADCY8P40145 1251 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 KCNQ1P51787 676 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 MRPL58Q14197 206 aaKnown RBP1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 TBR1Q16650 682 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 WDR72Q3MJ13 1102 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 PAN2Q504Q3 1202 aaKnown RBP1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 ZMAT1Q5H9K5 638 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 DENND5AQ6IQ26 1287 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 ULK2Q8IYT8 1036 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 TMEM87AQ8NBN3 555 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 KREMEN2Q8NCW0 462 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 OR14K1Q8NGZ2 314 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 TTLL11Q8NHH1 800 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 MRGPRX3Q96LB0 322 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 RIOX1Q9H6W3 641 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 NRDE2Q9H7Z3 1164 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 SLC39A2Q9NP94 309 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 ADARB2Q9NS39 739 aaKnown RBP1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 AURKAIP1Q9NWT8 199 aaPredicted RBP1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 PLA2G3Q9NZ20 509 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 LRP2BPQ9P2M1 347 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 PPARGC1AQ9UBK2 798 aaKnown RBP1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNHIT2Q9UHR6 403 aa1.87□□□□□ -2.11
SMARCB1-209ENST00000635578 CUTAO60888 179 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 HMGCRP04035 888 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNF37AP17032 561 aaPredicted RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 FBLP22087 321 aaKnown RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 GIPRP48546 466 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 MFAP1P55081 439 aaKnown RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 KRTAP10-11P60412 298 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 SLC25A3Q00325 362 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 TOP3AQ13472 1001 aaPredicted RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 RRP1BQ14684 758 aaKnown RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 GRM7Q14831 915 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 PCOLCEQ15113 449 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 SV2CQ496J9 727 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 EPHA10Q5JZY3 1008 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 MBNL2Q5VZF2 373 aaKnown RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 LARP4Q71RC2 724 aaKnown RBP eCLIP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 GAREM2Q75VX8 874 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNF227Q86WZ6 799 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 TMPRSS6Q8IU80 811 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 VRK3Q8IV63 474 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 GPR135Q8IZ08 494 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 THEMISQ8N1K5 641 aaPredicted RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 TMEM145Q8NBT3 493 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 GIPC2Q8TF65 315 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 CPLX3Q8WVH0 158 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNF764Q96H86 408 aaPredicted RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 KCNJ15Q99712 375 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 BCL2L13Q9BXK5 485 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNF703Q9H7S9 590 aaPredicted RBP1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 SLC6A20Q9NP91 592 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 HSPBP1Q9NZL4 362 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 CDC42EP3Q9UKI2 254 aa1.86□□□□□ -2.11
SMARCB1-209ENST00000635578 FAM20BO75063 409 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 GCP02774 474 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 GNAT1P11488 350 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 HOXC12P31275 282 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 ADRA1BP35368 520 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 ETV4P43268 484 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 SCNN1GP51170 649 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 C21orf58P58505 322 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 PAK2Q13177 524 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 CNGB1Q14028 1251 aaPredicted RBP1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 ZNF326Q5BKZ1 582 aaKnown RBP1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 ACBD5Q5T8D3 534 aaPredicted RBP1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 SPTY2D1Q68D10 685 aaPredicted RBP1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 CYP4F22Q6NT55 531 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 OTOP2Q7RTS6 562 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 PNPLA5Q7Z6Z6 429 aaPredicted RBP1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 FILIP1Q7Z7B0 1213 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 FAM169BQ8N8A8 192 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 OR6P1Q8NGX9 317 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 NTN5Q8WTR8 489 aaPredicted RBP1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 CFHR4Q92496 578 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 SCYL1Q96KG9 808 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 CD244Q9BZW8 370 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 CDIP1Q9H305 208 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 GPRC5BQ9NZH0 403 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 FAM184BQ9ULE4 1060 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 TELO2Q9Y4R8 837 aa1.85□□□□□ -2.11
SMARCB1-209ENST00000635578 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 KRTAP23-1A1A580 65 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 ACOT7O00154 380 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 NKRFO15226 690 aaKnown RBP eCLIP1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 CYP27B1O15528 508 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 MSCO60682 206 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 CPP00450 1065 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 LMNAP02545 664 aaKnown RBP1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 SCG5P05408 212 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 ITGB6P18564 788 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 PROZP22891 400 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 SOX9P48436 509 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 MRE11P49959 708 aa1.84□□□□□ -2.11
SMARCB1-209ENST00000635578 MEOX1P50221 254 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms