RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 USP17L6PQ6QN14 398 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 TSHZ1Q6ZSZ6 1077 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 TRIM67Q6ZTA4 783 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 LINC01599Q8WXQ3 324 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 GLG1Q92896 1179 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 CUL5Q93034 780 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 ZBTB10Q96DT7 871 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 FAM49AQ9H0Q0 323 aaPredicted RBP16.92■□□□□ 0.3
PNKP-218ENST00000625299 PKD2L1Q9P0L9 805 aa16.92■□□□□ 0.3
PNKP-218ENST00000625299 MRPS6P82932 125 aaKnown RBP16.91■□□□□ 0.3
PNKP-218ENST00000625299 WTAPQ15007 396 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 PCNX4Q63HM2 1172 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 CHD1LQ86WJ1 897 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 CMTR2Q8IYT2 770 aaKnown RBP16.91■□□□□ 0.3
PNKP-218ENST00000625299 KLHL23Q8NBE8 558 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 GIMAP8Q8ND71 665 aaPredicted RBP16.91■□□□□ 0.3
PNKP-218ENST00000625299 POF1BQ8WVV4 589 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 P2RX5Q93086 422 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 MSLNLQ96KJ4 702 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 SENP7Q9BQF6 1050 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 AGO3Q9H9G7 860 aaKnown RBP16.91■□□□□ 0.3
PNKP-218ENST00000625299 ERAP1Q9NZ08 941 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 CLEC1BQ9P126 229 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 BARX2Q9UMQ3 279 aaPredicted RBP16.91■□□□□ 0.3
PNKP-218ENST00000625299 PCDHGC5Q9Y5F6 944 aa16.91■□□□□ 0.3
PNKP-218ENST00000625299 LOXHD1Q8IVV2 1947 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 PPFIA3O75145 1194 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 TMEM62Q0P6H9 643 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 EFHBQ8N7U6 833 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 SMRP1Q8NCR6 262 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 SPPL3Q8TCT6 385 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 SNX27Q96L92 541 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 IL25Q9H293 177 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 OSBPL3Q9H4L5 887 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 PLXNA4Q9HCM2 1894 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 USP34Q70CQ2 3546 aa16.9■□□□□ 0.3
PNKP-218ENST00000625299 GSTTP1A0A1W2PQM5 241 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 ATP9AO75110 1047 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 EYA4O95677 639 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 GATMP50440 423 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 ZXDAP98168 799 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 BMP8AQ7Z5Y6 402 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 CATIPQ7Z7H3 387 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 RALYLQ86SE5 291 aaKnown RBP16.89■□□□□ 0.29
PNKP-218ENST00000625299 NPAS4Q8IUM7 802 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 SEPT1Q8WYJ6 367 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 RPGRIP1Q96KN7 1286 aa16.89■□□□□ 0.29
PNKP-218ENST00000625299 USP15Q9Y4E8 981 aaPredicted RBP16.89■□□□□ 0.29
PNKP-218ENST00000625299 KMT2EQ8IZD2 1858 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 ZDBF2Q9HCK1 2354 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 MBLAC1A4D2B0 266 aaPredicted RBP16.88■□□□□ 0.29
PNKP-218ENST00000625299 LOC730098B7Z3J9 87 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 M0QZ92 97 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 GLP2RO95838 553 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 STAG3L1P0CL83 205 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 KCNA2P16389 499 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 TROAPQ12815 778 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 COASYQ13057 564 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 PAK2Q13177 524 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 SART3Q15020 963 aaKnown RBP16.88■□□□□ 0.29
PNKP-218ENST00000625299 NAALADL2Q58DX5 795 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 MARCH8Q5T0T0 291 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 SPOUT1Q5T280 376 aaKnown RBP16.88■□□□□ 0.29
PNKP-218ENST00000625299 IER5Q5VY09 327 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 XRRA1Q6P2D8 792 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 RTN4RL1Q86UN2 441 aaPredicted RBP16.88■□□□□ 0.29
PNKP-218ENST00000625299 SMC5Q8IY18 1101 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 MICAL1Q8TDZ2 1067 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 RRP36Q96EU6 259 aaKnown RBP16.88■□□□□ 0.29
PNKP-218ENST00000625299 FTHL17Q9BXU8 183 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 RWDD1Q9H446 243 aaPredicted RBP16.88■□□□□ 0.29
PNKP-218ENST00000625299 SMARCAD1Q9H4L7 1026 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 FAM86C1Q9NVL1 165 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 LRFN2Q9ULH4 789 aa16.88■□□□□ 0.29
PNKP-218ENST00000625299 MEIS2O14770 477 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 PER2O15055 1255 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 SCG2P13521 617 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 TCF15Q12870 199 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 PKN1Q16512 942 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 FBXL6Q8N531 539 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 GPRASP2Q96D09 838 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 CDHR1Q96JP9 859 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 PRRX2Q99811 253 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 TLE6Q9H808 572 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 SEC63Q9UGP8 760 aaKnown RBP16.87■□□□□ 0.29
PNKP-218ENST00000625299 TRPC6Q9Y210 931 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 TRPV2Q9Y5S1 764 aa16.87■□□□□ 0.29
PNKP-218ENST00000625299 CYP21A2P08686 494 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 INSRRP14616 1297 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 ITGB5P18084 799 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 RBM10P98175 930 aaKnown RBP16.86■□□□□ 0.29
PNKP-218ENST00000625299 NUCB1Q02818 461 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 MTMR1Q13613 665 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 CTCFLQ8NI51 663 aaPredicted RBP16.86■□□□□ 0.29
PNKP-218ENST00000625299 MYL10Q9BUA6 226 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 PHF7Q9BWX1 381 aaPredicted RBP16.86■□□□□ 0.29
PNKP-218ENST00000625299 PADI3Q9ULW8 664 aa16.86■□□□□ 0.29
PNKP-218ENST00000625299 U3KPZ7 1027 aaPredicted RBP16.86■□□□□ 0.29
PNKP-218ENST00000625299 RRN3P2A6NIE6 340 aa16.85■□□□□ 0.29
PNKP-218ENST00000625299 PIK3CDO00329 1044 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms