RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ZNF713Q8N859 430 aaPredicted RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 TTC16Q8NEE8 873 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 SMCR8Q8TEV9 937 aaPredicted RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 PYROXD1Q8WU10 500 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 FAM161BQ96MY7 647 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 NT5C1BQ96P26 610 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 LIMA1Q9UHB6 759 aaKnown RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 MAD1L1Q9Y6D9 718 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 CDC42BPBQ9Y5S2 1711 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 TOM1L1O75674 476 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 CPP00450 1065 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 CD19P15391 556 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 NCF2P19878 526 aaPredicted RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 RARS2Q5T160 578 aaKnown RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 FAM47EQ6ZV65 393 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 TPH2Q8IWU9 490 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 PNMA1Q8ND90 353 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 GFPT2O94808 682 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 ACBD5Q5T8D3 534 aaPredicted RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 RNF207Q6ZRF8 634 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 TNRQ92752 1358 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 WDR91A4D1P6 747 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 GSTA1P08263 222 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 RFX1P22670 979 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 ITIH4Q14624 930 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 TSGA10IPQ3SY00 556 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 GCNT4Q9P109 453 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 LCMT1Q9UIC8 334 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 ARHGEF9O43307 516 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 KDM1AO60341 852 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 KCNA4P22459 653 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 SERPINB4P48594 390 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 MRPS25P82663 173 aaKnown RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 MED21Q13503 144 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 FAM47AQ5JRC9 791 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 KIF9Q9HAQ2 790 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 ADAMTS1Q9UHI8 967 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 AFG3L2Q9Y4W6 797 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 MAGEA13PA6NCF6 341 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 H7C0C1 242 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 POLD1P28340 1107 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 ATP5OP48047 213 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 NT5C2P49902 561 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 PPP2R5DQ14738 602 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 KPNB1Q14974 876 aaKnown RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 TTBK2Q6IQ55 1244 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 BZW1Q7L1Q6 419 aaKnown RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 ENAHQ8N8S7 591 aaPredicted RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.58□□□□□ -0.88
VCL-206ENST00000623461 TBC1D23Q9NUY8 699 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 PITPNM2Q9BZ72 1349 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 TTC26A0AVF1 554 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 RASSF3Q86WH2 238 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 TEKT4Q8WW24 435 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 PRMT1Q99873 361 aaKnown RBP9.58□□□□□ -0.88
VCL-206ENST00000623461 PALMDQ9NP74 551 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 SLC4A7Q9Y6M7 1214 aa9.58□□□□□ -0.88
VCL-206ENST00000623461 TEX33O43247 280 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 KRT37O76014 449 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 PODNQ7Z5L7 613 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 NGLY1Q96IV0 654 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 CTCFP49711 727 aaPredicted RBP9.57□□□□□ -0.88
VCL-206ENST00000623461 TTLL11Q8NHH1 800 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 KDM4CQ9H3R0 1056 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 TLR7Q9NYK1 1049 aaKnown RBP9.57□□□□□ -0.88
VCL-206ENST00000623461 KRT10P13645 584 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 NOP14P78316 857 aaKnown RBP9.57□□□□□ -0.88
VCL-206ENST00000623461 NR5A1Q13285 461 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 LONP2Q86WA8 852 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 PSTPIP2Q9H939 334 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 K7ENM7 598 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 COPEO14579 308 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 CHN1P15882 459 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 PDIK1LQ8N165 341 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 NSMCE1Q8WV22 266 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 SPC25Q9HBM1 224 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 SH3GLB2Q9NR46 395 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 hCG_2014768A0A024R1R8 64 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 LRRC53A6NM62 1247 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 KLRF2D3W0D1 207 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 AP1B1Q10567 949 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 NR1I3Q14994 352 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 RFX6Q8HWS3 928 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 MXD3Q9BW11 206 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 TRPC5Q9UL62 973 aaPredicted RBP9.57□□□□□ -0.88
VCL-206ENST00000623461 TRIM33Q9UPN9 1127 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 NUB1Q9Y5A7 615 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 CEP170Q5SW79 1584 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 TCP11X1B4DZS4 312 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 ZBTB24O43167 697 aaPredicted RBP9.57□□□□□ -0.88
VCL-206ENST00000623461 GAS7O60861 476 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 VHLP40337 213 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 TMPRSS15P98073 1019 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 DNAL1Q4LDG9 190 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 TPTE2Q6XPS3 522 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 ARHGEF10LQ9HCE6 1279 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 ATG3Q9NT62 314 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 USP17L12C9JPN9 530 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 USP17L21D6R901 530 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 GNGT2O14610 69 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms