RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 ARMCX3Q9UH62 379 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 UTRNP46939 3433 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 GOLGA6CA6NDK9 693 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 LCA5LO95447 670 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 GH2P01242 217 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 GOLGA6DP0CG33 693 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 CASP4P49662 377 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 PTK2Q05397 1052 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 GIT2Q14161 759 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 PLS1Q14651 629 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 KCTD16Q68DU8 428 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 TPH2Q8IWU9 490 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 RUFY1Q96T51 708 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 EPB41L5Q9HCM4 733 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 GOLGA6AQ9NYA3 693 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 STIM2Q9P246 746 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 NFU1Q9UMS0 254 aa14.21□□□□□ -0.14
CCDC88A-214ENST00000621814 SSU72P8A0A1W2PR75 194 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 CFBP00751 764 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 USP11P51784 963 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 TRADDQ15628 312 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 ABCB5Q2M3G0 1257 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 SH3BP5LQ7L8J4 393 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 SLFN12Q8IYM2 578 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 MMGT1Q8N4V1 131 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 ERMNQ8TAM6 284 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 CCDC17Q96LX7 622 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 CEP63Q96MT8 703 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 VIPAS39Q9H9C1 493 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 TMCO5BA8MYB1 307 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 NDUFB10O96000 172 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 GLI1P08151 1106 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 MMP10P09238 476 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 SLC18A3Q16572 532 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 CCDC174Q6PII3 467 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 HHIPL2Q6UWX4 724 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 LRRC31Q6UY01 552 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 SIAH1Q8IUQ4 282 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 LUC7LQ9NQ29 371 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 FAM198AQ9UFP1 575 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 BCS1LQ9Y276 419 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 ABCB11O95342 1321 aa14.2□□□□□ -0.14
CCDC88A-214ENST00000621814 KCNK3O14649 394 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 GNA14O95837 355 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 XRCC5P13010 732 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 CARSP49589 748 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 JAG1P78504 1218 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 KNOP1Q1ED39 458 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 TSEN2Q8NCE0 465 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 RUSC1Q9BVN2 902 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 EHD4Q9H223 541 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 LTBP4Q8N2S1 1624 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 CDK5RAP2Q96SN8 1893 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 TBCAO75347 108 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 AKAP3O75969 853 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 SPATA31C1P0DKV0 1188 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 EXOC3L4Q17RC7 722 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 MAEAQ7L5Y9 396 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 FAM76AQ8TAV0 307 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 AENQ8WTP8 325 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 PKD2L1Q9P0L9 805 aa14.19□□□□□ -0.14
CCDC88A-214ENST00000621814 MSH4O15457 936 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 HEXIM1O94992 359 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 ZC2HC1CQ53FD0 456 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 RDH13Q8NBN7 331 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 SUGT1Q9Y2Z0 365 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 EML1O00423 815 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 PJA2O43164 708 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 FAM153BP0C7A2 387 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 UCHL3P15374 230 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 NPR1P16066 1061 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 POLD1P28340 1107 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 ALDH1B1P30837 517 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 AARSP49588 968 aaKnown RBP eCLIP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 NAB2Q15742 525 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 FAM153CQ494X1 144 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 ZNF571Q7Z3V5 609 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 MYCT1Q8N699 235 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 ETNPPLQ8TBG4 499 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 FAM153AQ9UHL3 310 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 KRT14P02533 472 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 AFPP02771 609 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 PRLRP16471 622 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 NMT1P30419 496 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 HOXD13P35453 343 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 ECE1P42892 770 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 MUM1L1Q5H9M0 696 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 SYDE2Q5VT97 1194 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 COL23A1Q86Y22 540 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 TAF4BQ92750 862 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 AP1M1Q9BXS5 423 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 NUCKS1Q9H1E3 243 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 CENPHQ9H3R5 247 aa14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 QTRT2Q9H974 415 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.18□□□□□ -0.147e-6■■■■■ 74.5
CCDC88A-214ENST00000621814 ZC3H4Q9UPT8 1303 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-214ENST00000621814 ZNF831Q5JPB2 1677 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 MYO1CO00159 1063 aa14.17□□□□□ -0.14
CCDC88A-214ENST00000621814 SPIRE1Q08AE8 756 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms