RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TFF2Q03403 129 aa13.6□□□□□ -0.23
UPF3B-204ENST00000619445 WWC2Q6AWC2 1192 aa13.6□□□□□ -0.23
UPF3B-204ENST00000619445 MRPL38Q96DV4 380 aaKnown RBP13.6□□□□□ -0.23
UPF3B-204ENST00000619445 C1QTNF1Q9BXJ1 281 aa13.6□□□□□ -0.23
UPF3B-204ENST00000619445 FTHL17Q9BXU8 183 aa13.6□□□□□ -0.23
UPF3B-204ENST00000619445 MTUS1Q9ULD2 1270 aa13.6□□□□□ -0.23
UPF3B-204ENST00000619445 V9GY48 417 aaPredicted RBP13.6□□□□□ -0.23
UPF3B-204ENST00000619445 KLF18A0A0U1RQI7 1052 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 hCG_1642624A0A1W2PR95 340 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 SMCO2A6NFE2 343 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 RB1P06400 928 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 ZNF76P36508 570 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 SREBF1P36956 1147 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 PUS10Q3MIT2 529 aaKnown RBP13.59□□□□□ -0.23
UPF3B-204ENST00000619445 EPC2Q52LR7 807 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 TSHZ1Q6ZSZ6 1077 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 NME8Q8N427 588 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 IL17RAQ96F46 866 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 ANO3Q9BYT9 981 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 TTC3P53804 2025 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 REV3LO60673 3130 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 NLRC5Q86WI3 1866 aa13.59□□□□□ -0.23
UPF3B-204ENST00000619445 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.58□□□□□ -0.23
UPF3B-204ENST00000619445 ESYT2A0FGR8 921 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 H3BNC9 293 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 STXBP3O00186 592 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 MEIS1O00470 390 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 NCK2O43639 380 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 CHRNA1P02708 482 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 MARK3P27448 753 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 STAT5BP51692 787 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 MRPS6P82932 125 aaKnown RBP13.58□□□□□ -0.23
UPF3B-204ENST00000619445 FUT2Q10981 343 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 ODR4Q5SWX8 454 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 FAM160B1Q5W0V3 765 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 KRT40Q6A162 431 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 RAB11FIP4Q86YS3 637 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 FIBCD1Q8N539 461 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 LMAN2LQ9H0V9 348 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 TCEAL9Q9UHQ7 104 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 TRPC6Q9Y210 931 aa13.58□□□□□ -0.23
UPF3B-204ENST00000619445 UPP2O95045 317 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 REC8O95072 547 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 GHRP10912 638 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 INSRRP14616 1297 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 GNA11P29992 359 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 METAP2P50579 478 aaKnown RBP eCLIP13.58□□□□□ -0.24
UPF3B-204ENST00000619445 KCNQ1P51787 676 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 ACTR2P61160 394 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 AKAP17AQ02040 695 aaKnown RBP13.58□□□□□ -0.24
UPF3B-204ENST00000619445 MGAT3Q09327 533 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 PFKFB3Q16875 520 aaPredicted RBP13.58□□□□□ -0.24
UPF3B-204ENST00000619445 FBXO47Q5MNV8 452 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 TMEM192Q8IY95 271 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 FBXL16Q8N461 479 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 BICD2Q8TD16 824 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 DNAJB3Q8WWF6 145 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 C17orf80Q9BSJ5 609 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 C11orf84Q9BUA3 381 aaPredicted RBP13.58□□□□□ -0.24
UPF3B-204ENST00000619445 UBE2ZQ9H832 354 aaPredicted RBP13.58□□□□□ -0.24
UPF3B-204ENST00000619445 AGO4Q9HCK5 861 aaKnown RBP13.58□□□□□ -0.24
UPF3B-204ENST00000619445 C6orf50Q9HD87 102 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 PKD2L1Q9P0L9 805 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 BRPF3Q9ULD4 1205 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 FAM50BQ9Y247 325 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 PCDHA2Q9Y5H9 948 aa13.58□□□□□ -0.24
UPF3B-204ENST00000619445 MYH9P35579 1960 aaKnown RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 COL1A2P08123 1366 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 SMIM35A0A1B0GVV1 85 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 POTEB3A0JP26 581 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 EPB41L2O43491 1005 aaKnown RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 ATG7O95352 703 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 CYP3A4P08684 503 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 SCG2P13521 617 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 PSMA5P28066 241 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 CLK2P49760 499 aaKnown RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 SETQ01105 290 aaPredicted RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 GPM6BQ13491 265 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 COL9A3Q14050 684 aaPredicted RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 LPIN1Q14693 890 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 MARCH8Q5T0T0 291 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 BLOC1S2Q6QNY1 142 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 POTEBQ6S5H4 581 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 RUFY4Q6ZNE9 571 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 SPRED2Q7Z698 418 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 RASEFQ8IZ41 740 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 KCNB2Q92953 911 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 TBC1D22BQ9NU19 505 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 NAP1L2Q9ULW6 460 aaPredicted RBP13.57□□□□□ -0.24
UPF3B-204ENST00000619445 TRPV2Q9Y5S1 764 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 CDY2AQ9Y6F7 541 aa13.57□□□□□ -0.24
UPF3B-204ENST00000619445 ADGRA3Q8IWK6 1321 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 KDM3AQ9Y4C1 1321 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 NID2Q14112 1375 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 XIRP2A4UGR9 3374 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 C5orf67F2Z3F1 127 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 HBP1O60381 514 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 STAG3L1P0CL83 205 aa13.56□□□□□ -0.24
UPF3B-204ENST00000619445 IGBP1P78318 339 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms