RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TBC1D10BQ4KMP7 808 aaPredicted RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 MIIPQ5JXC2 388 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 TBC1D9BQ66K14 1250 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 CCDC197Q8NCU1 140 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.73□□□□□ -0.21
LIG1-221ENST00000613670 MKRN4PQ13434 485 aaPredicted RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 ZKSCAN8Q15776 578 aaPredicted RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 STXBP4Q6ZWJ1 553 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 MYCBPAPQ8TBZ2 947 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 ELAC2Q9BQ52 826 aaKnown RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 NUDT12Q9BQG2 462 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 TRIM51Q9BSJ1 452 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 A0A1B0GUA9 196 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 CUL1Q13616 776 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 MESDQ14696 234 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 CDC37Q16543 378 aaPredicted RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 OTUD6AQ7L8S5 288 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 TBC1D1Q86TI0 1168 aaPredicted RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 MSL3Q8N5Y2 521 aaKnown RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 RSRC1Q96IZ7 334 aaKnown RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 ZMYND12Q9H0C1 365 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 DNAJC17Q9NVM6 304 aaKnown RBP13.73□□□□□ -0.21
LIG1-221ENST00000613670 GGT7Q9UJ14 662 aa13.73□□□□□ -0.21
LIG1-221ENST00000613670 DDX39AO00148 427 aaKnown RBP13.72□□□□□ -0.21
LIG1-221ENST00000613670 PPP2R2AP63151 447 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 PTK2Q05397 1052 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 ITPK1Q13572 414 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 FAM182BQ5T319 152 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 CCDC63Q8NA47 563 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 MDM1Q8TC05 714 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 ANKS1AQ92625 1134 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 MLXIPLQ9NP71 852 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 HAUS2Q9NVX0 235 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 GGA1Q9UJY5 639 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 MTUS1Q9ULD2 1270 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 NAB2Q15742 525 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 FIGNQ5HY92 759 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 TTBK2Q6IQ55 1244 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 SFR1Q86XK3 245 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 TUBGCP6Q96RT7 1819 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 ATRNO75882 1429 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 RASA1P20936 1047 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 HSD17B3P37058 310 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 NEDD9Q14511 834 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 FAM98CQ17RN3 349 aaKnown RBP13.72□□□□□ -0.21
LIG1-221ENST00000613670 CCDC50Q8IVM0 306 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 PROM2Q8N271 834 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 USP38Q8NB14 1042 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 CYFIP2Q96F07 1278 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 BHMT2Q9H2M3 363 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 SALL4Q9UJQ4 1053 aa13.72□□□□□ -0.21
LIG1-221ENST00000613670 BZW2Q9Y6E2 419 aaKnown RBP13.72□□□□□ -0.21
LIG1-221ENST00000613670 SBK1Q52WX2 424 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 GLYCTKQ8IVS8 523 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 UBL4BQ8N7F7 174 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 ZC3H12CQ9C0D7 883 aaKnown RBP13.71□□□□□ -0.21
LIG1-221ENST00000613670 STMN4Q9H169 189 aaPredicted RBP13.71□□□□□ -0.21
LIG1-221ENST00000613670 VEZTQ9HBM0 779 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 NKRFO15226 690 aaKnown RBP eCLIP13.71□□□□□ -0.21
LIG1-221ENST00000613670 PRLRP16471 622 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 FBXO33Q7Z6M2 555 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 C4orf32Q8N8J7 132 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 FAM114A2Q9NRY5 505 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 CCDC169A6NNP5 214 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 UBXN2AP68543 259 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 DR1Q01658 176 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 INTS5Q6P9B9 1019 aaKnown RBP13.71□□□□□ -0.21
LIG1-221ENST00000613670 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.71□□□□□ -0.212e-7■■■■□ 20.8
LIG1-221ENST00000613670 USP40Q9NVE5 1235 aa13.71□□□□□ -0.21
LIG1-221ENST00000613670 ZNF233A6NK53 670 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 USP17L10C9JJH3 530 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 CFBP00751 764 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 MMEP08473 750 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 CCDC38Q502W7 563 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 GJB7Q6PEY0 223 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 KCNK18Q7Z418 384 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 NGLY1Q96IV0 654 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 PSMD1Q99460 953 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 CXorf56Q9H5V9 222 aa13.71□□□□□ -0.22
LIG1-221ENST00000613670 MST1RQ04912 1400 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 NEBLO76041 1014 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 FAM107AO95990 144 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 CDK17Q00537 523 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 KDM7AQ6ZMT4 941 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 FAM186BQ8IYM0 893 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 PIGOQ8TEQ8 1089 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 HVCN1Q96D96 273 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 PNMA2Q9UL42 364 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 SIK3Q9Y2K2 1263 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 LMO7Q8WWI1 1683 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 GRID2IPA4D2P6 1211 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 ANKRD62A6NC57 917 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 FAM196BA6NMK8 535 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 FECHP22830 423 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 NEK9Q8TD19 979 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 SPZ1Q9BXG8 430 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 TMOD4Q9NZQ9 345 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 CCNL1Q9UK58 526 aaPredicted RBP13.7□□□□□ -0.22
LIG1-221ENST00000613670 EEF2P13639 858 aaKnown RBP13.7□□□□□ -0.22
LIG1-221ENST00000613670 ASPRV1Q53RT3 343 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms