RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SMAP1Q8IYB5 467 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 INTS4Q96HW7 963 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 MTMR9Q96QG7 549 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 ERAP1Q9NZ08 941 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 MAFBQ9Y5Q3 323 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 SIP14410 1827 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 CYP2C18P33260 490 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 STAT5BP51692 787 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 PLCB4Q15147 1175 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 PTGISQ16647 500 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 UGCGQ16739 394 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 MFSD5Q6N075 450 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 LMBR1Q8WVP7 490 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 FAM20AQ96MK3 541 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 NAP1L4Q99733 375 aaKnown RBP22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 TEKT3Q9BXF9 490 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 PPP1R12CQ9BZL4 782 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 TMEM60Q9H2L4 133 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 HIPK3Q9H422 1215 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 SETD4Q9NVD3 440 aa22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 ZNF215Q9UL58 517 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-221ENST00000599833 ZBTB42B2RXF5 422 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 EML1O00423 815 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 TREHO43280 583 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 ZNF862O60290 1169 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 GAS7O60861 476 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 RAG1P15918 1043 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 PPP2R5CQ13362 524 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 GPNMBQ14956 572 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 C16orf59Q7L2K0 433 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 SERINC5Q86VE9 423 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 C4orf32Q8N8J7 132 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 PCDHA10Q9Y5I2 948 aa22.04■■□□□ 1.12
SHKBP1-221ENST00000599833 C17orf102A2RUQ5 167 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 MBLAC1A4D2B0 266 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 STBD1O95210 358 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 NBR1Q14596 966 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 SWSAP1Q6NVH7 229 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 MIS18BP1Q6P0N0 1132 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 GLG1Q92896 1179 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 DISC1Q9NRI5 854 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 PRKAG2Q9UGJ0 569 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 NRCAMQ92823 1304 aa22.03■■□□□ 1.12
SHKBP1-221ENST00000599833 WDR64B1ANS9 1081 aa22.02■■□□□ 1.12
SHKBP1-221ENST00000599833 PITPNM1O00562 1244 aa22.02■■□□□ 1.12
SHKBP1-221ENST00000599833 PTK7Q13308 1070 aa22.02■■□□□ 1.12
SHKBP1-221ENST00000599833 ZBTB10Q96DT7 871 aa22.02■■□□□ 1.12
SHKBP1-221ENST00000599833 ZNF302Q9NR11 478 aa22.02■■□□□ 1.12
SHKBP1-221ENST00000599833 KIF3AQ9Y496 699 aa22.02■■□□□ 1.12
SHKBP1-221ENST00000599833 CHMP2AO43633 222 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 PSAPP07602 524 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 INSRRP14616 1297 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 CSF2RAP15509 400 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 TRAPPC10P48553 1259 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 SLC26A2P50443 739 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 RDM1Q8NG50 284 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 AZI2Q9H6S1 392 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 GABBR1Q9UBS5 961 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 CHD9Q3L8U1 2897 aa22.01■■□□□ 1.11
SHKBP1-221ENST00000599833 NEMFO60524 1076 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 SFNP31947 248 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 JAK3P52333 1124 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 CCL23P55773 120 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 PPFIA1Q13136 1202 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 GRIK4Q16099 956 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 LARP1BQ659C4 914 aaKnown RBP22■■□□□ 1.11
SHKBP1-221ENST00000599833 PDXDC2PQ6P474 469 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 RUFY4Q6ZNE9 571 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 ATP8B4Q8TF62 1192 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 ATP6V0A1Q93050 837 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 SCLYQ96I15 445 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 EVPLQ92817 2033 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 CDH23Q9H251 3354 aa22■■□□□ 1.11
SHKBP1-221ENST00000599833 BACH1O14867 736 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 IQCF3P0C7M6 154 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 CKBP12277 381 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 FPGSQ05932 587 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 ORC2Q13416 577 aaPredicted RBP21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 MBTPS1Q14703 1052 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 TTC38Q5R3I4 469 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 C9orf50Q5SZB4 431 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 CAGE1Q8TC20 777 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 TRAPPC12Q8WVT3 735 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 CEP89Q96ST8 783 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 LBHD1Q9BQE6 289 aaPredicted RBP21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 WRAP73Q9P2S5 460 aaPredicted RBP21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 PCDHB6Q9Y5E3 794 aa21.99■■□□□ 1.11
SHKBP1-221ENST00000599833 POTEB3A0JP26 581 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 ATP2B1P20020 1258 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 SYT1P21579 422 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 MCM7P33993 719 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 ZNF174Q15697 407 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 CALCRLQ16602 461 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 FAM160B1Q5W0V3 765 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 POTEBQ6S5H4 581 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 MIER3Q7Z3K6 550 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 RPAINQ86UA6 219 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 SLFN12Q8IYM2 578 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 OSBPL7Q9BZF2 842 aa21.98■■□□□ 1.11
SHKBP1-221ENST00000599833 FOXD4L1Q9NU39 408 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms