RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CELF3Q5SZQ8 465 aaKnown RBP17.27■□□□□ 0.36
UPF1-206ENST00000598471 MFSD14CQ5VZR4 134 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 IQSEC1Q6DN90 963 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 SMARCE1Q969G3 411 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 NACC1Q96RE7 527 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 KATNBL1Q9H079 304 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 KIAA1468Q9P260 1216 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.26■□□□□ 0.35
UPF1-206ENST00000598471 BACH1O14867 736 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 SORBS3O60504 671 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 SLITRK3O94933 977 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 SUPT20HL2P0C7V6 817 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 CCDC192P0DO97 292 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 PRKCZQ05513 592 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 PNOCQ13519 176 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 LAMC2Q13753 1193 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 ECM1Q16610 540 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 CCL14Q16627 93 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 LRSAM1Q6UWE0 723 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 GRAMD1CQ8IYS0 662 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 BANK1Q8NDB2 785 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 SEPT1Q8WYJ6 367 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 CCDC47Q96A33 483 aaKnown RBP17.26■□□□□ 0.35
UPF1-206ENST00000598471 CCDC43Q96MW1 224 aaKnown RBP17.26■□□□□ 0.35
UPF1-206ENST00000598471 PDGFCQ9NRA1 345 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 BMP2KQ9NSY1 1161 aaPredicted RBP17.26■□□□□ 0.35
UPF1-206ENST00000598471 BLOC1S4Q9NUP1 217 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 KBTBD4Q9NVX7 518 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 FLRT1Q9NZU1 646 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 SRRDQ9UH36 339 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 GABRQQ9UN88 632 aa17.26■□□□□ 0.35
UPF1-206ENST00000598471 E9PMD0 336 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 LYPLA2O95372 231 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 EYA4O95677 639 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 SSBP05455 408 aaKnown RBP eCLIP17.25■□□□□ 0.35
UPF1-206ENST00000598471 PLA2G4BP0C869 781 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 CYP2C19P33261 490 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 ADCYAP1R1P41586 468 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 PRMT2P55345 433 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 MDM2Q00987 491 aaPredicted RBP17.25■□□□□ 0.35
UPF1-206ENST00000598471 MCM6Q14566 821 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 FAM160B1Q5W0V3 765 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 ABHD15Q6UXT9 468 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 KCNK18Q7Z418 384 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 SPATA33Q96N06 139 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 RMND1Q9NWS8 449 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 MCM3APO60318 1980 aa17.25■□□□□ 0.35
UPF1-206ENST00000598471 ATG7O95352 703 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 PRR29P0C7W0 189 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 DHX8Q14562 1220 aaKnown RBP17.24■□□□□ 0.35
UPF1-206ENST00000598471 CCDC144BQ3MJ40 725 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 DUSP28Q4G0W2 176 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 C4orf19Q8IY42 314 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 LRRC15Q8TF66 581 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 EMID1Q96A84 441 aaPredicted RBP17.24■□□□□ 0.35
UPF1-206ENST00000598471 AZI2Q9H6S1 392 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 BCAS3Q9H6U6 928 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 ZNF302Q9NR11 478 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 GABBR1Q9UBS5 961 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 TUBE1Q9UJT0 475 aa17.24■□□□□ 0.35
UPF1-206ENST00000598471 ZNF865P0CJ78 1059 aaPredicted RBP17.23■□□□□ 0.35
UPF1-206ENST00000598471 XRCC6P12956 609 aaKnown RBP eCLIP17.23■□□□□ 0.35
UPF1-206ENST00000598471 TNFAIP2Q03169 654 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 TYRO3Q06418 890 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 ARHGAP1Q07960 439 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 DPYDQ12882 1025 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 STX1AQ16623 288 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 SWSAP1Q6NVH7 229 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 OTUD6AQ7L8S5 288 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 GPBP1Q86WP2 473 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 SYT2Q8N9I0 419 aaPredicted RBP17.23■□□□□ 0.35
UPF1-206ENST00000598471 TRIML1Q8N9V2 468 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 RAET1EQ8TD07 263 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 STAMQ92783 540 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 GSDMAQ96QA5 445 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 C7orf25Q9BPX7 421 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 BHMT2Q9H2M3 363 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 TSPY26PQ9H489 355 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 ANO10Q9NW15 660 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 FAM184BQ9ULE4 1060 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 PCDHA5Q9Y5H7 936 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 ZSWIM8A7E2V4 1837 aa17.23■□□□□ 0.35
UPF1-206ENST00000598471 IGSF9BQ9UPX0 1349 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 DOCK3Q8IZD9 2030 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 GSTTP1A0A1W2PQM5 241 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 ARHGEF35A5YM69 484 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 IGHA2P01877 340 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 KRT18P05783 430 aaKnown RBP17.22■□□□□ 0.35
UPF1-206ENST00000598471 TCF7P36402 384 aaPredicted RBP17.22■□□□□ 0.35
UPF1-206ENST00000598471 SLC12A3P55017 1021 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 ASIC1P78348 528 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 CUL4BQ13620 913 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 NT5DC1Q5TFE4 455 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 CNNM4Q6P4Q7 775 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 CCDC60Q8IWA6 550 aaPredicted RBP17.22■□□□□ 0.35
UPF1-206ENST00000598471 OR6J1Q8NGC5 347 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 TRIB2Q92519 343 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 ERCC4Q92889 916 aaPredicted RBP17.22■□□□□ 0.35
UPF1-206ENST00000598471 COPS5Q92905 334 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 GPR20Q99678 358 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms