RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SLC9C1Q4G0N8 1177 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 KIAA1841Q6NSI8 718 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 ZBTB33Q86T24 672 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 FAM186BQ8IYM0 893 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 P2RX5Q93086 422 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 KLRG1Q96E93 195 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 NUCKS1Q9H1E3 243 aaKnown RBP10.77□□□□□ -0.68
LIG3-216ENST00000593099 TUFT1Q9NNX1 390 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 IL17RBQ9NRM6 502 aa10.77□□□□□ -0.68
LIG3-216ENST00000593099 POTEFA5A3E0 1075 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 VWA5AO00534 786 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 POTEIP0CG38 1075 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 ERCC5P28715 1186 aaPredicted RBP10.77□□□□□ -0.69
LIG3-216ENST00000593099 ZNF658Q5TYW1 1059 aaPredicted RBP10.77□□□□□ -0.69
LIG3-216ENST00000593099 TWF2Q6IBS0 349 aaKnown RBP10.77□□□□□ -0.69
LIG3-216ENST00000593099 POTEGQ6S5H5 508 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 POTEEQ6S8J3 1075 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 TEX2Q8IWB9 1127 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 PAGE5Q96GU1 130 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 KIF2CQ99661 725 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 SHTN1A0MZ66 631 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 CYP2C8P10632 490 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 U2AF2P26368 475 aaKnown RBP eCLIP10.77□□□□□ -0.69
LIG3-216ENST00000593099 GJC1P36383 396 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 CPT1AP50416 773 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 GNG11P61952 73 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 RESP18Q5W5W9 173 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 SMAP1Q8IYB5 467 aaPredicted RBP10.77□□□□□ -0.69
LIG3-216ENST00000593099 GRAMD1CQ8IYS0 662 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 ANKS1AQ92625 1134 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 RAD54LQ92698 747 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 DDX12PQ92771 950 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 RIOX1Q9H6W3 641 aa10.77□□□□□ -0.69
LIG3-216ENST00000593099 RPF1Q9H9Y2 349 aaKnown RBP10.77□□□□□ -0.69
LIG3-216ENST00000593099 PGK2P07205 417 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 TFAMQ00059 246 aaKnown RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 CDC42EP1Q00587 391 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 RHPN2Q8IUC4 686 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 SOCS4Q8WXH5 440 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 JADE2Q9NQC1 790 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 PRDM5Q9NQX1 630 aaPredicted RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 DENND3A2RUS2 1198 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 SFI1A8K8P3 1242 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 KIF28PB7ZC32 967 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 TFRCP02786 760 aaKnown RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 KRT9P35527 623 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 ZNF445P59923 1031 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 LONRF3Q496Y0 759 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 UNC13DQ70J99 1090 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 RNF34Q969K3 372 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 MSTO1Q9BUK6 570 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 MTIF3Q9H2K0 278 aaKnown RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 TOPORSQ9NS56 1045 aaPredicted RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 FAM207AQ9NSI2 230 aaPredicted RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 HESX1Q9UBX0 185 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 A0A087WWV3 80 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 TMEM110-MUSTN1A8MSY1 372 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 ZBBXA8MT70 800 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 MAGEB2O15479 319 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 PSMC4P43686 418 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 TNNC1P63316 161 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 DGKDQ16760 1214 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 METTL23Q86XA0 190 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 MKL1Q969V6 931 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 PCIF1Q9H4Z3 704 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 CLIC2O15247 247 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 ERLIN1O75477 346 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 LDHAP00338 332 aaKnown RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 OSTNP61366 133 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 SNW1Q13573 536 aaKnown RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 ARRDC4Q8NCT1 418 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 WNK4Q96J92 1243 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 MED10Q9BTT4 135 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 LSM14BQ9BX40 385 aaKnown RBP10.76□□□□□ -0.69
LIG3-216ENST00000593099 SEL1LQ9UBV2 794 aa10.76□□□□□ -0.69
LIG3-216ENST00000593099 STAT1P42224 750 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 PIK3CAP42336 1068 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 KLHL30Q0D2K2 578 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 PPM1KQ8N3J5 372 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 DAGLBQ8NCG7 672 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 NAA15Q9BXJ9 866 aaKnown RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 NLRC4Q9NPP4 1024 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 KCNH7Q9NS40 1196 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 EYA4O95677 639 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 CCNE1P24864 410 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 ERVK-9P63128 1117 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 ERVK-24P63145 666 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 THNSL1Q8IYQ7 743 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 POLR3FQ9H1D9 316 aaPredicted RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 ERAP1Q9NZ08 941 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 RGL1Q9NZL6 768 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 CPSF2Q9P2I0 782 aaKnown RBP10.75□□□□□ -0.69
LIG3-216ENST00000593099 ERICH4A6NGS2 130 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 CLDN3O15551 220 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 KMT5BQ4FZB7 885 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 SFMBT2Q5VUG0 894 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 LRRC45Q96CN5 670 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 NT5C1BQ96P26 610 aa10.75□□□□□ -0.69
LIG3-216ENST00000593099 TMX1Q9H3N1 280 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms