RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 SLC26A4O43511 780 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 HSD17B3P37058 310 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 PTK2Q05397 1052 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 KCNH2Q12809 1159 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 ADAM9Q13443 819 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 IFI16Q16666 785 aaKnown RBP16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 MAATS1Q7Z4T9 603 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 CCDC24Q8N4L8 307 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 LRRC45Q96CN5 670 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 EMILIN3Q9NT22 766 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 PCDHA12Q9UN75 941 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 ATP8B3O60423 1300 aa16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 GCFC2P16383 781 aaKnown RBP16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 NELFCDQ8IXH7 590 aa16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 C3orf20Q8ND61 904 aa16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 KANSL2Q9H9L4 492 aa16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 MTMR4Q9NYA4 1195 aa16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 TBC1D7Q9P0N9 293 aa16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 TNRC6CQ9HCJ0 1690 aaKnown RBP16.27■□□□□ 0.2
SMARCA4-219ENST00000592604 PNMA6FA0A0J9YX94 578 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 FRMD3A2A2Y4 597 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 GOLGA6L10A6NI86 522 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 SEC24CP53992 1094 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 RHBDL3P58872 404 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 C6orf89Q6UWU4 347 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 SMIM5Q71RC9 77 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 ZNF571Q7Z3V5 609 aaPredicted RBP16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 FAM163AQ96GL9 167 aaPredicted RBP16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 POLD4Q9HCU8 107 aa16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 SRP68Q9UHB9 627 aaKnown RBP16.27■□□□□ 0.19
SMARCA4-219ENST00000592604 E9PMD0 336 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 CETN3O15182 167 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 PLA2G4BP0C869 781 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 UAP1Q16222 522 aaPredicted RBP16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 NRAPQ86VF7 1730 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 GCOM1H8Y6P7 765 aaPredicted RBP16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 MYZAPP0CAP1 466 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 ANXA13P27216 316 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 HLTFQ14527 1009 aaKnown RBP eCLIP16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 HERC4Q5GLZ8 1057 aaPredicted RBP16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 CABS1Q96KC9 395 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 NENFQ9UMX5 172 aa16.26■□□□□ 0.19
SMARCA4-219ENST00000592604 CCDC188H7C350 402 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 SSBP05455 408 aaKnown RBP eCLIP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 CYP11B2P19099 503 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 PRKCIP41743 596 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 EPS15P42566 896 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 DDR1Q08345 913 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 BIRC3Q13489 604 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 UBE2SQ16763 222 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 RC3H1Q5TC82 1133 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 FRMD5Q7Z6J6 570 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 JMJD4Q9H9V9 463 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 NAGPAQ9UK23 515 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 KIAA1024Q9UPX6 916 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 PITPNM2Q9BZ72 1349 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 SART1O43290 800 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 RPS6KA4O75676 772 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 HDLBPQ00341 1268 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 GRAPQ13588 217 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 ENOX2Q16206 610 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 SLFN11Q7Z7L1 901 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 GPBP1Q86WP2 473 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 GRAPLQ8TC17 118 aaPredicted RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 NAP1L4Q99733 375 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 NCAPGQ9BPX3 1015 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.25■□□□□ 0.198e-9■■□□□ 13.9
SMARCA4-219ENST00000592604 SLC12A6Q9UHW9 1150 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 ARFGEF1Q9Y6D6 1849 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 IGKV6D-41A0A0C4DH26 115 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 PGRMC1O00264 195 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 CEP104O60308 925 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 PPP1R11O60927 126 aaPredicted RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 UCHL3P15374 230 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 MNAT1P51948 309 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 MRPL12P52815 198 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 ZNF844Q08AG5 666 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 DRP2Q13474 957 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 PLCB4Q15147 1175 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 RUFY4Q6ZNE9 571 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 RASGEF1CQ8N431 466 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 CUL5Q93034 780 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 GJA10Q969M2 543 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 SWAP70Q9UH65 585 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 TRAF3IP3Q9Y228 551 aa16.25■□□□□ 0.19
SMARCA4-219ENST00000592604 MYO1FO00160 1098 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 MARCH6O60337 910 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 KCNQ4P56696 695 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 ACTN3Q08043 901 aaPredicted RBP16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 METTL13Q8N6R0 699 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 TPCN2Q8NHX9 752 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 HDAC9Q9UKV0 1011 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 NPHP3-ACAD11A0A0J9YXS1 232 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 E7EVH7 732 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 H0YHG0 523 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 ACTN1P12814 892 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 SLC9A1P19634 815 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 NFIXQ14938 502 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 AGBL2Q5U5Z8 902 aa16.24■□□□□ 0.19
SMARCA4-219ENST00000592604 ALKBH5Q6P6C2 394 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms