RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LRRC8DQ7L1W4 858 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 FAM160A2Q8N612 972 aaPredicted RBP4.78□□□□□ -1.64
LIG3-211ENST00000588713 ACER1Q8TDN7 264 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 ATG4CQ96DT6 458 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 THAP11Q96EK4 314 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 LRIG1Q96JA1 1093 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 NEK1Q96PY6 1258 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 DNAJC18Q9H819 358 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 KCND1Q9NSA2 647 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 TMEM51Q9NW97 253 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 HOXC10Q9NYD6 342 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 FAM53CQ9NYF3 392 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 PI4KBQ9UBF8 816 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 ZNF462Q96JM2 2506 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 TET1Q8NFU7 2136 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 ATG2AQ2TAZ0 1938 aa4.78□□□□□ -1.64
LIG3-211ENST00000588713 CEP295Q9C0D2 2601 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 HECTD1Q9ULT8 2610 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 STX6O43752 255 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 FLOT1O75955 427 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 C1QL1O75973 258 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 KCNK5O95279 499 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 SLC25A27O95847 323 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 SELPP16109 830 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 CHMLP26374 656 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 HSPA4P34932 840 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TECP42680 631 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 RHBDL3P58872 404 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 FOXO4P98177 505 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 CSTF1Q05048 431 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 SRSF1Q07955 248 aaKnown RBP eCLIP4.77□□□□□ -1.65
LIG3-211ENST00000588713 DHX8Q14562 1220 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 TMEM132BQ14DG7 1078 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 AASDHQ4L235 1098 aaPredicted RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 KSR2Q6VAB6 950 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 RBM43Q6ZSC3 357 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 ARMCX2Q7L311 632 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 PLA2G4DQ86XP0 818 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 C17orf53Q8N3J3 647 aaPredicted RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 FIBCD1Q8N539 461 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 MSL3Q8N5Y2 521 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 CCDC155Q8N6L0 562 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TSPYL6Q8N831 410 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 MB21D1Q8N884 522 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TDRD5Q8NAT2 981 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 CCDC112Q8NEF3 446 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 KIF18AQ8NI77 898 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 OTUD7AQ8TE49 926 aaPredicted RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 AFAP1L1Q8TED9 768 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 HNRNPLLQ8WVV9 542 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 TSC1Q92574 1164 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 DDX11Q96FC9 970 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TIGD1Q96MW7 591 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TTC14Q96N46 770 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 DNAJC2Q99543 621 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 SCNM1Q9BWG6 230 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 KIAA1683Q9H0B3 1180 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 EPC1Q9H2F5 836 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 ABHD16BQ9H3Z7 469 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 CLMPQ9H6B4 373 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TLE6Q9H808 572 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 TBC1D17Q9HA65 648 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 PRDM9Q9NQV7 894 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 SEMA4GQ9NTN9 838 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 DDX19AQ9NUU7 478 aaKnown RBP4.77□□□□□ -1.65
LIG3-211ENST00000588713 TOR4AQ9NXH8 423 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 RAB23Q9ULC3 237 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 PALD1Q9ULE6 856 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 CA14Q9ULX7 337 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 ADAMTS20P59510 1910 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 WDFY3Q8IZQ1 3526 aa4.77□□□□□ -1.65
LIG3-211ENST00000588713 MROH7-TTC4A0A0A0MT08 1334 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 DSPP15924 2871 aaKnown RBP4.76□□□□□ -1.65
LIG3-211ENST00000588713 C5orf67F2Z3F1 127 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 LGR5O75473 907 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 AVPP01185 164 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 NTRK1P04629 796 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 RB1P06400 928 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 IFIT1P09914 478 aaKnown RBP4.76□□□□□ -1.65
LIG3-211ENST00000588713 SLFN14P0C7P3 912 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 BMPR1AP36894 532 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 MCAMP43121 646 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 NKX3-2P78367 333 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 ZNF252P-AS1Q0IIN9 211 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 CAMK1Q14012 370 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 TERF2Q15554 542 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 KIAA1211LQ6NV74 962 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 LLGL2Q6P1M3 1020 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 BRICD5Q6PL45 260 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 SARM1Q6SZW1 724 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 MAMDC4Q6UXC1 1216 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 MAML2Q8IZL2 1156 aaPredicted RBP4.76□□□□□ -1.65
LIG3-211ENST00000588713 VN1R2Q8NFZ6 395 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 CAGE1Q8TC20 777 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 MICAL1Q8TDZ2 1067 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 MAP4K1Q92918 833 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 IFIH1Q9BYX4 1025 aaKnown RBP4.76□□□□□ -1.65
LIG3-211ENST00000588713 LRRCC1Q9C099 1032 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 NUP62CLQ9H1M0 184 aa4.76□□□□□ -1.65
LIG3-211ENST00000588713 POMKQ9H5K3 350 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms