RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SEL1LQ9UBV2 794 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 FAM184BQ9ULE4 1060 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 UBIAD1Q9Y5Z9 338 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 COL11A1P12107 1806 aaPredicted RBP12.46□□□□□ -0.42
LIG3-204ENST00000585740 POLR2AP24928 1970 aaKnown RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 RLFQ13129 1914 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 ASTN2O75129 1339 aaPredicted RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 TTC26A0AVF1 554 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 SOWAHDA6NJG2 315 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 IPO5O00410 1097 aaKnown RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 EIF3DO15371 548 aaKnown RBP eCLIP12.45□□□□□ -0.42
LIG3-204ENST00000585740 SLITRK3O94933 977 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 FAM13AO94988 1023 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 ITGBL1O95965 494 aaPredicted RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 CASQ1P31415 396 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 CYLC1P35663 651 aaPredicted RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 PSMC6P62333 389 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 CYP4A11Q02928 519 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 LRRC41Q15345 812 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 MEA1Q16626 185 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 EAPPQ56P03 285 aaPredicted RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 TPH2Q8IWU9 490 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 CPXCR1Q8N123 301 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 SYTL5Q8TDW5 730 aaPredicted RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 SCFD1Q8WVM8 642 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 ERO1AQ96HE7 468 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 UIMC1Q96RL1 719 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 REEP2Q9BRK0 252 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 TTYH3Q9C0H2 523 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 BHMT2Q9H2M3 363 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 KCTD10Q9H3F6 313 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 ZHX3Q9H4I2 956 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 TAF1DQ9H5J8 278 aaPredicted RBP12.45□□□□□ -0.42
LIG3-204ENST00000585740 OLFML3Q9NRN5 406 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 TBC1D22BQ9NU19 505 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 MYO1AQ9UBC5 1043 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 TCEAL9Q9UHQ7 104 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 DNAI1Q9UI46 699 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 ODF2LQ9ULJ1 636 aa12.45□□□□□ -0.42
LIG3-204ENST00000585740 NPHP3-ACAD11A0A0J9YXS1 232 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 VWA5AO00534 786 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 NFIBO00712 420 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 PDXKO00764 312 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 KIF5CO60282 957 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 ARP10275 920 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 RPL13P26373 211 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 DSG3P32926 999 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 ERVK-24P63145 666 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 UBXN2AP68543 259 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 TUBB2AQ13885 445 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 CTTNQ14247 550 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 KNOP1Q1ED39 458 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 RINT1Q6NUQ1 792 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 RNF207Q6ZRF8 634 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 EPM2AIP1Q7L775 607 aaPredicted RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 MIER3Q7Z3K6 550 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 SFR1Q86XK3 245 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 CCDC170Q8IYT3 715 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 TRPM4Q8TD43 1214 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 TRERF1Q96PN7 1200 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 TUBB2BQ9BVA1 445 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 NUCKS1Q9H1E3 243 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 UNC45AQ9H3U1 944 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 AGO4Q9HCK5 861 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 TYW1Q9NV66 732 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 GGA3Q9NZ52 723 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 RGL1Q9NZL6 768 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 TBC1D7Q9P0N9 293 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 SCAF8Q9UPN6 1271 aaKnown RBP12.44□□□□□ -0.42
LIG3-204ENST00000585740 TRAF3IP3Q9Y228 551 aa12.44□□□□□ -0.42
LIG3-204ENST00000585740 RASSF10A6NK89 507 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 ATP2A1O14983 1001 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 SLC16A3O15427 465 aaKnown RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 CHMP2AO43633 222 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 IPO7O95373 1038 aaKnown RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 P4HBP07237 508 aaKnown RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 GNG11P61952 73 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 RPS6P62753 249 aaKnown RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 KRT83P78385 493 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 MAP2K1Q02750 393 aaPredicted RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 COG2Q14746 738 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 NFIL3Q16649 462 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 DEFB115Q30KQ5 88 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 ARHGAP29Q52LW3 1261 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 ZNF662Q6ZS27 426 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 C1orf186Q6ZWK4 172 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 FRMD5Q7Z6J6 570 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 NELFCDQ8IXH7 590 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 RDM1Q8NG50 284 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 ATG4CQ96DT6 458 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 RUSC1Q9BVN2 902 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 TIPINQ9BVW5 301 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 ZSWIM4Q9H7M6 989 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 METTL14Q9HCE5 456 aaKnown RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 ADARB2Q9NS39 739 aaKnown RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 RNF146Q9NTX7 359 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 COL20A1Q9P218 1284 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 ADAMTS5Q9UNA0 930 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 CLEC11AQ9Y240 323 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms