RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 RIOX2Q8IUF8 465 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 PCDH19Q8TAB3 1148 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 TOE1Q96GM8 510 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 LCORQ96JN0 433 aaPredicted RBP6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 ZSWIM3Q96MP5 696 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 KCNJ15Q99712 375 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 CAAP1Q9H8G2 361 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 PCDH12Q9NPG4 1184 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 PPARGC1AQ9UBK2 798 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 PCDHB4Q9Y5E5 795 aa6.61□□□□□ -1.35
SMCHD1-205ENST00000581383 hCG_2014768A0A024R1R8 64 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 FAM83GA6ND36 823 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 ARVCFO00192 962 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 KCNA6P17658 529 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 FLT3P36888 993 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 MAGEA10P43363 369 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 ITGA1P56199 1179 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 AMPD3Q01432 767 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 KRTAP1-1Q07627 177 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 PCBP1Q15365 356 aaKnown RBP eCLIP6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 CFAP100Q494V2 611 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 CT47A1Q5JQC4 288 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 FAM26FQ5R3K3 315 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 UBE2R2Q712K3 238 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 MIB1Q86YT6 1006 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 ANKRD13AQ8IZ07 590 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 LEO1Q8WVC0 666 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 JAM3Q9BX67 310 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 CDIP1Q9H305 208 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 IPPKQ9H8X2 491 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 MAPRE3Q9UPY8 281 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 INVSQ9Y283 1065 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 COQ6Q9Y2Z9 468 aa6.6□□□□□ -1.35
SMCHD1-205ENST00000581383 B4E1Z4 1266 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 KRIT1O00522 736 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 KPNA6O60684 536 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 GRK2P25098 689 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 GRK3P35626 688 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 SOX5P35711 763 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 IGBP1P78318 339 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 NFKB2Q00653 900 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 PIK3R6Q5UE93 754 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 CDCA2Q69YH5 1023 aaPredicted RBP6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 ZCCHC8Q6NZY4 707 aaKnown RBP6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 RNF180Q86T96 592 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 NLRP10Q86W26 655 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 AHI1Q8N157 1196 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 PPM1KQ8N3J5 372 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 IGSF22Q8N9C0 903 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 TXNDC5Q8NBS9 432 aaKnown RBP6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 MTFR1LQ9H019 292 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 TMEM168Q9H0V1 697 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 SAMD15Q9P1V8 674 aa6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 NOP58Q9Y2X3 529 aaKnown RBP6.59□□□□□ -1.35
SMCHD1-205ENST00000581383 FAM47E-STBD1D6RA91 191 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 H7BY64 318 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 PLATP00750 562 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 ITGB3P05106 788 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 POU3F2P20265 443 aaPredicted RBP6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 DNM2P50570 870 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 PLEKHH3Q7Z736 793 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 DDX53Q86TM3 631 aaKnown RBP6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 FBXW5Q969U6 566 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 WNK4Q96J92 1243 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 FAM126AQ9BYI3 521 aaPredicted RBP6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 TMPRSS5Q9H3S3 457 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 EPB41L1Q9H4G0 881 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 CATSPERZQ9NTU4 200 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 X6R8D5 127 aa6.58□□□□□ -1.36
SMCHD1-205ENST00000581383 CCDC66A2RUB6 948 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 CKMP06732 381 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 PYGMP11217 842 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 ANAPC15P60006 121 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 ST5P78524 1137 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 SURF1Q15526 300 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 PKN3Q6P5Z2 889 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 DDX46Q7L014 1031 aaKnown RBP6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 WRNIP1Q96S55 665 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 BRINP2Q9C0B6 783 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 DTLQ9NZJ0 730 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 MYOTQ9UBF9 498 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 FTSJ1Q9UET6 329 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 ZNF652Q9Y2D9 606 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 MYRFQ9Y2G1 1151 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 ZDHHC9Q9Y397 364 aa6.57□□□□□ -1.36
SMCHD1-205ENST00000581383 M0R2C6 588 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 WNT9AO14904 365 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 GSTA4O15217 222 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 GLRX3O76003 335 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 POU3F3P20264 500 aaPredicted RBP6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 SEPT7Q16181 437 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 TBC1D10BQ4KMP7 808 aaPredicted RBP6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 FAM47CQ5HY64 1035 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 TRMT10BQ6PF06 316 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 STRA8Q7Z7C7 330 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 ARRDC4Q8NCT1 418 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 C8orf49Q96NF6 230 aa6.56□□□□□ -1.36
SMCHD1-205ENST00000581383 NPEPPSL1A6NEC2 478 aa6.55□□□□□ -1.36
SMCHD1-205ENST00000581383 GNAT1P11488 350 aa6.55□□□□□ -1.36
SMCHD1-205ENST00000581383 COL6A2P12110 1019 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms