RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, human

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFFL-208	ENST00000581039	TUBE1	Q9UJT0	475 aa		11.44	□□□□□ -0.58
RFFL-208	ENST00000581039	CDY2A	Q9Y6F7	541 aa		11.44	□□□□□ -0.58
RFFL-208	ENST00000581039	MRPL42	Q9Y6G3	142 aa	Known RBP	11.44	□□□□□ -0.58
RFFL-208	ENST00000581039	WDFY4	Q6ZS81	3184 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	RALGAPA2	Q2PPJ7	1873 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	NLRC5	Q86WI3	1866 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	MBLAC1	A4D2B0	266 aa	Predicted RBP	11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	LOC730098	B7Z3J9	87 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	RPLP2	P05387	115 aa	Known RBP	11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	STAG3L1	P0CL83	205 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	DNAJB1	P25685	340 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	MARK3	P27448	753 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	CD52	P31358	61 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	NRIP1	P48552	1158 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	MRPS6	P82932	125 aa	Known RBP	11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	ZXDA	P98168	799 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	WTAP	Q15007	396 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	SART3	Q15020	963 aa	Known RBP	11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	USP17L6P	Q6QN14	398 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	CATIP	Q7Z7H3	387 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	RBM23	Q86U06	439 aa	Known RBP	11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	NPAS4	Q8IUM7	802 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	PRSS33	Q8NF86	280 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	MICAL1	Q8TDZ2	1067 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	CDHR1	Q96JP9	859 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	SNX27	Q96L92	541 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	SMARCAD1	Q9H4L7	1026 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	AGO3	Q9H9G7	860 aa	Known RBP	11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	ZNF318	Q5VUA4	2279 aa		11.43	□□□□□ -0.58
RFFL-208	ENST00000581039	GSTTP1	A0A1W2PQM5	241 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	RRN3P2	A6NIE6	340 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039		M0QZ92	97 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	ST18	O60284	1047 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	ATP9A	O75110	1047 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	PPFIA3	O75145	1194 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	IGBP1	P78318	339 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	TROAP	Q12815	778 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	PAN2	Q504Q3	1202 aa	Known RBP	11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	MARCH8	Q5T0T0	291 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	ADGRD2	Q7Z7M1	963 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	SMC5	Q8IY18	1101 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	FBXL6	Q8N531	539 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	SMRP1	Q8NCR6	262 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	POF1B	Q8WVV4	589 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	TNPO1	Q92973	898 aa	Known RBP	11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	GPRASP2	Q96D09	838 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	RRP36	Q96EU6	259 aa	Known RBP	11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	FAM49A	Q9H0Q0	323 aa	Predicted RBP	11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	TLE6	Q9H808	572 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	SENP2	Q9HC62	589 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	LRFN2	Q9ULH4	789 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	SQOR	Q9Y6N5	450 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039		U3KPZ7	1027 aa	Predicted RBP	11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	TECTA	O75443	2155 aa		11.42	□□□□□ -0.58
RFFL-208	ENST00000581039	PIK3CD	O00329	1044 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	MEIS2	O14770	477 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	SCG2	P13521	617 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	KCNA2	P16389	499 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	NUCB1	Q02818	461 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	PAK2	Q13177	524 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	CBX2	Q14781	532 aa	Predicted RBP	11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	RALYL	Q86SE5	291 aa	Known RBP	11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	CRIPAK	Q8N1N5	446 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	LINC01599	Q8WXQ3	324 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	RPGRIP1	Q96KN7	1286 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	PHF7	Q9BWX1	381 aa	Predicted RBP	11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	PKD2L1	Q9P0L9	805 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	SEC63	Q9UGP8	760 aa	Known RBP	11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	PADI3	Q9ULW8	664 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	BARX2	Q9UMQ3	279 aa	Predicted RBP	11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	USP15	Q9Y4E8	981 aa	Predicted RBP	11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	PCDHB12	Q9Y5F1	795 aa		11.41	□□□□□ -0.58
RFFL-208	ENST00000581039	C5orf42	Q9H799	3197 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	TTC3	P53804	2025 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	BAZ2B	Q9UIF8	2168 aa	Known RBP	11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	MAFG	O15525	162 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	INSRR	P14616	1297 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	ITGB5	P18084	799 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	IBSP	P21815	317 aa	Predicted RBP	11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	SIGLEC14	Q08ET2	396 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	TMEM62	Q0P6H9	643 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	TCF15	Q12870	199 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	MTMR1	Q13613	665 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	AAMP	Q13685	434 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	SPOUT1	Q5T280	376 aa	Known RBP	11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	NCOA7	Q8NI08	942 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	CTCFL	Q8NI51	663 aa	Predicted RBP	11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	ZBTB10	Q96DT7	871 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	CELF4	Q9BZC1	486 aa	Known RBP	11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	IRF2BPL	Q9H1B7	796 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	AZI2	Q9H6S1	392 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	PSTPIP2	Q9H939	334 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	AAAS	Q9NRG9	546 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	TRPC6	Q9Y210	931 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	PCDHB7	Q9Y5E2	793 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	TRPV2	Q9Y5S1	764 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	TRIO	O75962	3097 aa		11.4	□□□□□ -0.58
RFFL-208	ENST00000581039	KAT6A	Q92794	2004 aa		11.4	□□□□□ -0.59
RFFL-208	ENST00000581039	LAMA4	Q16363	1823 aa		11.39	□□□□□ -0.59

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