RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GGPS1O95749 300 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 GH1P01241 217 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 SUPT20HL2P0C7V6 817 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 PLA2G4BP0C869 781 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 CYP2B6P20813 491 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 CTGFP29279 349 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 KCNB1Q14721 858 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 ECM1Q16610 540 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 MFSD14CQ5VZR4 134 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 CYFIP1Q7L576 1253 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 EEPD1Q7L9B9 569 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 TPH2Q8IWU9 490 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 AFAP1L1Q8TED9 768 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 LXNQ9BS40 222 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 FUCA2Q9BTY2 467 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 ANKEF1Q9NU02 776 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 ANO10Q9NW15 660 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 RGL1Q9NZL6 768 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 PPME1Q9Y570 386 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 PLXNA1Q9UIW2 1896 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 POTEFA5A3E0 1075 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 FLT3LGP49771 235 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 FAM160B1Q5W0V3 765 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 POTEGQ6S5H5 508 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 OTUD6AQ7L8S5 288 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 CKAP2LQ8IYA6 745 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 UIMC1Q96RL1 719 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 MTRQ99707 1265 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 TIPINQ9BVW5 301 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 TRIM9Q9C026 710 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 SRRDQ9UH36 339 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 PCDHA5Q9Y5H7 936 aa17.05■□□□□ 0.32
SS18-215ENST00000580642 MAFBQ9Y5Q3 323 aaPredicted RBP17.05■□□□□ 0.32
SS18-215ENST00000580642 KIAA1217Q5T5P2 1943 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 NOP56O00567 594 aaKnown RBP17.04■□□□□ 0.32
SS18-215ENST00000580642 LGR5O75473 907 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 ARIH2O95376 493 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 AFMP43652 599 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 SLC12A3P55017 1021 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 HTRA3P83110 453 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 CYP4A11Q02928 519 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 PNOCQ13519 176 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 CTTNQ14247 550 aaKnown RBP17.04■□□□□ 0.32
SS18-215ENST00000580642 STX1AQ16623 288 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 LY6KQ17RY6 165 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 PLPPR4Q7Z2D5 763 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 PPTC7Q8NI37 304 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 PXYLP1Q8TE99 480 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 PLIN2Q99541 437 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 GPR20Q99678 358 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 FAM184BQ9ULE4 1060 aa17.04■□□□□ 0.32
SS18-215ENST00000580642 EMSYQ7Z589 1322 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 IGSF9BQ9UPX0 1349 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 PPFIA4O75335 1185 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 ZNF865P0CJ78 1059 aaPredicted RBP17.03■□□□□ 0.32
SS18-215ENST00000580642 PPP1R2P41236 205 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 NLRP12P59046 1061 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 TNFAIP2Q03169 654 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 TYRO3Q06418 890 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 ARHGAP1Q07960 439 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 MCM6Q14566 821 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 XKR3Q5GH77 459 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 KCNK18Q7Z418 384 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 LRRC15Q8TF66 581 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 FAM167AQ96KS9 214 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 SPATA33Q96N06 139 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 NAT10Q9H0A0 1025 aaKnown RBP17.03■□□□□ 0.32
SS18-215ENST00000580642 TSPY26PQ9H489 355 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 AZI2Q9H6S1 392 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 ZNF302Q9NR11 478 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 PDGFCQ9NRA1 345 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 FLRT1Q9NZU1 646 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 GABBR1Q9UBS5 961 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 DACH1Q9UI36 760 aa17.03■□□□□ 0.32
SS18-215ENST00000580642 ZHX1Q9UKY1 873 aaPredicted RBP17.03■□□□□ 0.32
SS18-215ENST00000580642 GSTTP1A0A1W2PQM5 241 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 E9PMD0 336 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 RPN1P04843 607 aaKnown RBP17.02■□□□□ 0.32
SS18-215ENST00000580642 HOXD8P13378 290 aaPredicted RBP17.02■□□□□ 0.32
SS18-215ENST00000580642 YWHABP31946 246 aaKnown RBP17.02■□□□□ 0.32
SS18-215ENST00000580642 ADCYAP1R1P41586 468 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 PRKCZQ05513 592 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 PSMD2Q13200 908 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 CCDC144BQ3MJ40 725 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 SWSAP1Q6NVH7 229 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 UNC13DQ70J99 1090 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 EXOC8Q8IYI6 725 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 MLKLQ8NB16 471 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 BANK1Q8NDB2 785 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 ARHGAP39Q9C0H5 1083 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 BHMT2Q9H2M3 363 aa17.02■□□□□ 0.32
SS18-215ENST00000580642 MGAMO43451 1857 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 CASP8AP2Q9UKL3 1982 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 MYMKA6NI61 221 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 BACH1O14867 736 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 FOXN1O15353 648 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 RHOBTB3O94955 611 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 AKR1A1P14550 325 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 CYP11B2P19099 503 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 GUCY2CP25092 1073 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms