RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 POTEMA6NI47 508 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 P4HBP07237 508 aaKnown RBP20.44■□□□□ 0.86
CCDC40-213ENST00000574933 LONP1P36776 959 aaKnown RBP20.44■□□□□ 0.86
CCDC40-213ENST00000574933 STAT5BP51692 787 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 FAM160B1Q5W0V3 765 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 NCAPH2Q6IBW4 605 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 KCNG4Q8TDN1 519 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 AK8Q96MA6 479 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 HSD17B14Q9BPX1 270 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 KATNAL1Q9BW62 490 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 SEZ6LQ9BYH1 1024 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 AZI2Q9H6S1 392 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 SAMM50Q9Y512 469 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 STK24Q9Y6E0 443 aa20.44■□□□□ 0.86
CCDC40-213ENST00000574933 VWA3AA6NCI4 1184 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 H3BRB1 525 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 MYCNP04198 464 aaPredicted RBP20.43■□□□□ 0.86
CCDC40-213ENST00000574933 ZNF286BP0CG31 522 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 MARCKSP29966 332 aaPredicted RBP20.43■□□□□ 0.86
CCDC40-213ENST00000574933 SWSAP1Q6NVH7 229 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 GLT1D1Q96MS3 346 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 POLR3CQ9BUI4 534 aaPredicted RBP20.43■□□□□ 0.86
CCDC40-213ENST00000574933 SCAND2PQ9GZW5 306 aaPredicted RBP20.43■□□□□ 0.86
CCDC40-213ENST00000574933 TUT1Q9H6E5 874 aaKnown RBP20.43■□□□□ 0.86
CCDC40-213ENST00000574933 ZNF302Q9NR11 478 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 ERAP1Q9NZ08 941 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 LRWD1Q9UFC0 647 aa20.43■□□□□ 0.86
CCDC40-213ENST00000574933 ZNF215Q9UL58 517 aaPredicted RBP20.43■□□□□ 0.86
CCDC40-213ENST00000574933 SLC26A4O43511 780 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 MUTP22033 750 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 PSEN2P49810 448 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 UTP14CQ5TAP6 766 aaKnown RBP20.42■□□□□ 0.86
CCDC40-213ENST00000574933 TRIM50Q86XT4 487 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 KRI1Q8N9T8 703 aaKnown RBP20.42■□□□□ 0.86
CCDC40-213ENST00000574933 SLC43A3Q8NBI5 491 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 ERMNQ8TAM6 284 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 DIS3LQ8TF46 1054 aaKnown RBP20.42■□□□□ 0.86
CCDC40-213ENST00000574933 LEO1Q8WVC0 666 aaPredicted RBP20.42■□□□□ 0.86
CCDC40-213ENST00000574933 CHAMP1Q96JM3 812 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 EIF2AK1Q9BQI3 630 aaKnown RBP20.42■□□□□ 0.86
CCDC40-213ENST00000574933 GABBR1Q9UBS5 961 aa20.42■□□□□ 0.86
CCDC40-213ENST00000574933 CCDC85CA6NKD9 419 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 BACH1O14867 736 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 ZNF862O60290 1169 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 DKC1O60832 514 aaKnown RBP eCLIP20.41■□□□□ 0.86
CCDC40-213ENST00000574933 SLITRK3O94933 977 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 LYPLA2O95372 231 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 SPATA31C1P0DKV0 1188 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 ATP4AP20648 1035 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 RPA1P27694 616 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 QARSP47897 775 aaKnown RBP20.41■□□□□ 0.86
CCDC40-213ENST00000574933 PSMC5P62195 406 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 GRIN1Q05586 938 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 MFSD10Q14728 455 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 SNX17Q15036 470 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 C1orf53Q5VUE5 145 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 PDXDC2PQ6P474 469 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 NECAB2Q7Z6G3 386 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 SESTD1Q86VW0 696 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 ZNF579Q8NAF0 562 aaKnown RBP20.41■□□□□ 0.86
CCDC40-213ENST00000574933 GLG1Q92896 1179 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 TNPO1Q92973 898 aaKnown RBP20.41■□□□□ 0.86
CCDC40-213ENST00000574933 ATP6V0A1Q93050 837 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 PAWRQ96IZ0 340 aaKnown RBP20.41■□□□□ 0.86
CCDC40-213ENST00000574933 MMTAG2Q9BU76 263 aaKnown RBP20.41■□□□□ 0.86
CCDC40-213ENST00000574933 TUFT1Q9NNX1 390 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 GRIN2DO15399 1336 aa20.41■□□□□ 0.86
CCDC40-213ENST00000574933 A0A0U1RQG5 324 aaPredicted RBP20.4■□□□□ 0.86
CCDC40-213ENST00000574933 STBD1O95210 358 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 HOXC8P31273 242 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 PTPN11Q06124 597 aaPredicted RBP20.4■□□□□ 0.86
CCDC40-213ENST00000574933 UGCGQ16739 394 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 KIAA0753Q2KHM9 967 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 HYIQ5T013 277 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 AXDND1Q5T1B0 1012 aaPredicted RBP20.4■□□□□ 0.86
CCDC40-213ENST00000574933 HAUS3Q68CZ6 603 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 NFRKBQ6P4R8 1299 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 CLEC17AQ6ZS10 378 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 C4orf19Q8IY42 314 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 DYDC2Q96IM9 177 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 FAM167AQ96KS9 214 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 SPATA32Q96LK8 384 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 C11orf49Q9H6J7 331 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 STARD7Q9NQZ5 370 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 RGL1Q9NZL6 768 aa20.4■□□□□ 0.86
CCDC40-213ENST00000574933 CUTAO60888 179 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 NCLP19338 710 aaKnown RBP20.39■□□□□ 0.85
CCDC40-213ENST00000574933 CDK7P50613 346 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 ITGA7Q13683 1181 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 PLCB4Q15147 1175 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 NBPF20Q3BBV1 942 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 KCTD17Q8N5Z5 321 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 ATP8B4Q8TF62 1192 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 BBXQ8WY36 941 aaPredicted RBP20.39■□□□□ 0.85
CCDC40-213ENST00000574933 LXNQ9BS40 222 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 CCSER1Q9C0I3 900 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 SENP6Q9GZR1 1112 aaPredicted RBP20.39■□□□□ 0.85
CCDC40-213ENST00000574933 CSRNP2Q9H175 543 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 RNPEPQ9H4A4 650 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 ZSWIM4Q9H7M6 989 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms