RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 FBXO47Q5MNV8 452 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 PTCRAQ6ISU1 281 aaPredicted RBP24.14■■□□□ 1.45
VPS53-216ENST00000574029 HEATR3Q7Z4Q2 680 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 PABPC5Q96DU9 382 aaKnown RBP24.14■■□□□ 1.45
VPS53-216ENST00000574029 PCYT2Q99447 389 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 LRRC2Q9BYS8 371 aa24.14■■□□□ 1.45
VPS53-216ENST00000574029 NSUN3Q9H649 340 aaKnown RBP24.14■■□□□ 1.45
VPS53-216ENST00000574029 RC3H2Q9HBD1 1191 aaKnown RBP24.14■■□□□ 1.45
VPS53-216ENST00000574029 RB1P06400 928 aa24.13■■□□□ 1.45
VPS53-216ENST00000574029 MICU3Q86XE3 530 aa24.13■■□□□ 1.45
VPS53-216ENST00000574029 GJD3Q8N144 294 aa24.13■■□□□ 1.45
VPS53-216ENST00000574029 FAM122AQ96E09 287 aa24.13■■□□□ 1.45
VPS53-216ENST00000574029 JPH1Q9HDC5 661 aaPredicted RBP24.13■■□□□ 1.45
VPS53-216ENST00000574029 RWDD3Q9Y3V2 267 aa24.13■■□□□ 1.45
VPS53-216ENST00000574029 ARIH1Q9Y4X5 557 aaPredicted RBP24.13■■□□□ 1.45
VPS53-216ENST00000574029 CDY2AQ9Y6F7 541 aa24.13■■□□□ 1.45
VPS53-216ENST00000574029 ADGRA3Q8IWK6 1321 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 RRN3P2A6NIE6 340 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 RPLP2P05387 115 aaKnown RBP24.12■■□□□ 1.45
VPS53-216ENST00000574029 INSRRP14616 1297 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 CTNNB1P35222 781 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 BMPR1AP36894 532 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 MRPS6P82932 125 aaKnown RBP24.12■■□□□ 1.45
VPS53-216ENST00000574029 TSHZ1Q6ZSZ6 1077 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 TEX2Q8IWB9 1127 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 ZNF689Q96CS4 500 aaPredicted RBP24.12■■□□□ 1.45
VPS53-216ENST00000574029 MXRA8Q9BRK3 442 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 KCNH7Q9NS40 1196 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 SLC9A2Q9UBY0 812 aa24.12■■□□□ 1.45
VPS53-216ENST00000574029 TTC3P53804 2025 aa24.11■■□□□ 1.45
VPS53-216ENST00000574029 H3BQ06 376 aaPredicted RBP24.11■■□□□ 1.45
VPS53-216ENST00000574029 IGBP1P78318 339 aa24.11■■□□□ 1.45
VPS53-216ENST00000574029 WWC2Q6AWC2 1192 aa24.11■■□□□ 1.45
VPS53-216ENST00000574029 CLP1Q92989 425 aaKnown RBP24.11■■□□□ 1.45
VPS53-216ENST00000574029 LMAN2LQ9H0V9 348 aa24.11■■□□□ 1.45
VPS53-216ENST00000574029 ANO2Q9NQ90 1003 aa24.11■■□□□ 1.45
VPS53-216ENST00000574029 SQORQ9Y6N5 450 aa24.11■■□□□ 1.45
VPS53-216ENST00000574029 NFASCO94856 1347 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 CNTNAP5Q8WYK1 1306 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 TYW1BQ6NUM6 668 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 SYNE3Q6ZMZ3 975 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 CYP2W1Q8TAV3 490 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 ZBTB10Q96DT7 871 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 C11orf84Q9BUA3 381 aaPredicted RBP24.1■■□□□ 1.45
VPS53-216ENST00000574029 AGO3Q9H9G7 860 aaKnown RBP24.1■■□□□ 1.45
VPS53-216ENST00000574029 RIC8AQ9NPQ8 531 aa24.1■■□□□ 1.45
VPS53-216ENST00000574029 RBM28Q9NW13 759 aaKnown RBP24.1■■□□□ 1.45
VPS53-216ENST00000574029 DGKIO75912 1065 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 IER5Q5VY09 327 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 PPP1R18Q6NYC8 613 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 APOA5Q6Q788 366 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 LINC01599Q8WXQ3 324 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 TNPO1Q92973 898 aaKnown RBP24.09■■□□□ 1.45
VPS53-216ENST00000574029 AZI2Q9H6S1 392 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 HCN4Q9Y3Q4 1203 aa24.09■■□□□ 1.45
VPS53-216ENST00000574029 LOXHD1Q8IVV2 1947 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 GRM6O15303 877 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 NCK2O43639 380 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 ARP10275 920 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 CD52P31358 61 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 ACTR2P61160 394 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 FUT2Q10981 343 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 BTG3Q14201 252 aaPredicted RBP24.08■■□□□ 1.45
VPS53-216ENST00000574029 PLCB4Q15147 1175 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 PLPPR4Q7Z2D5 763 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 CRIPAKQ8N1N5 446 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 NEK1Q96PY6 1258 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 SDF4Q9BRK5 362 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 FAM49AQ9H0Q0 323 aaPredicted RBP24.08■■□□□ 1.45
VPS53-216ENST00000574029 TRPC6Q9Y210 931 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 PCDHA2Q9Y5H9 948 aa24.08■■□□□ 1.45
VPS53-216ENST00000574029 FAM86C2PA6NEL3 165 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 FOSP01100 380 aaPredicted RBP24.07■■□□□ 1.44
VPS53-216ENST00000574029 SSTR3P32745 418 aaPredicted RBP24.07■■□□□ 1.44
VPS53-216ENST00000574029 NAPAP54920 295 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 EXOSC10Q01780 885 aaKnown RBP24.07■■□□□ 1.44
VPS53-216ENST00000574029 RNF20Q5VTR2 975 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 RTN4RL1Q86UN2 441 aaPredicted RBP24.07■■□□□ 1.44
VPS53-216ENST00000574029 PGBD1Q96JS3 809 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 FTHL17Q9BXU8 183 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 ANO3Q9BYT9 981 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 AGO4Q9HCK5 861 aaKnown RBP24.07■■□□□ 1.44
VPS53-216ENST00000574029 CLDND1Q9NY35 253 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 TRPV2Q9Y5S1 764 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 KIAA1671Q9BY89 1806 aa24.07■■□□□ 1.44
VPS53-216ENST00000574029 ATG7O95352 703 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 LTBRP36941 435 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 STAT5BP51692 787 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 ITGB3BPQ13352 177 aaPredicted RBP24.06■■□□□ 1.44
VPS53-216ENST00000574029 CTC1Q2NKJ3 1217 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 CEP55Q53EZ4 464 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 EP400NLQ6ZTU2 488 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 PLVAPQ9BX97 442 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 BRPF3Q9ULD4 1205 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 FAM50BQ9Y247 325 aa24.06■■□□□ 1.44
VPS53-216ENST00000574029 POTEB3A0JP26 581 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 hCG_1984214I3L0E3 225 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 STXBP3O00186 592 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 MEIS1O00470 390 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 ADCY7P51828 1080 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms