RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PBX2P40425 430 aa21.23■□□□□ 0.99
CLN3-227ENST00000567495 KRT76Q01546 638 aa21.23■□□□□ 0.99
CLN3-227ENST00000567495 IKBKEQ14164 716 aa21.23■□□□□ 0.99
CLN3-227ENST00000567495 FAM160B1Q5W0V3 765 aa21.23■□□□□ 0.99
CLN3-227ENST00000567495 ZNF746Q6NUN9 644 aaPredicted RBP21.23■□□□□ 0.99
CLN3-227ENST00000567495 SMAP1Q8IYB5 467 aaPredicted RBP21.23■□□□□ 0.99
CLN3-227ENST00000567495 PCYT2Q99447 389 aa21.23■□□□□ 0.99
CLN3-227ENST00000567495 IGKV6D-21A0A0A0MT36 114 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 KIF28PB7ZC32 967 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 SEC24BO95487 1268 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 CCNE2O96020 404 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 FAM26DQ5JW98 314 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 ABHD15Q6UXT9 468 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 SLC28A3Q9HAS3 691 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 TUBE1Q9UJT0 475 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 TRPC6Q9Y210 931 aa21.22■□□□□ 0.99
CLN3-227ENST00000567495 BACH1O14867 736 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 INSRRP14616 1297 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 MBTPS1Q14703 1052 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 MOXD1Q6UVY6 613 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 KRT25Q7Z3Z0 450 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 TBCKQ8TEA7 893 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 GTF3C6Q969F1 213 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 LENG9Q96B70 501 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 RIT2Q99578 217 aa21.21■□□□□ 0.99
CLN3-227ENST00000567495 ORC3Q9UBD5 711 aaPredicted RBP21.21■□□□□ 0.99
CLN3-227ENST00000567495 CYP3A7-CYP3A51PA0A087WV96 503 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 POTEB3A0JP26 581 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 M0R2N6 131 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 DDX39AO00148 427 aaKnown RBP21.2■□□□□ 0.98
CLN3-227ENST00000567495 CYP3A7P24462 503 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 PLCB4Q15147 1175 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 NONOQ15233 471 aaKnown RBP eCLIP21.2■□□□□ 0.98
CLN3-227ENST00000567495 NPY5RQ15761 445 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 ME3Q16798 604 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 POTEBQ6S5H4 581 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 HERC6Q8IVU3 1022 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 SEPT8Q92599 483 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 AIFM3Q96NN9 605 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 PHF20Q9BVI0 1012 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 PCDHA10Q9Y5I2 948 aa21.2■□□□□ 0.98
CLN3-227ENST00000567495 HBP1O60381 514 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 CTDNEP1O95476 244 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 PSAPP07602 524 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 WDR5P61964 334 aaKnown RBP21.19■□□□□ 0.98
CLN3-227ENST00000567495 GRIN2CQ14957 1233 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 Q4G0T1 1027 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 PLEKHG4Q58EX7 1191 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 MARCH8Q5T0T0 291 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 PDXDC2PQ6P474 469 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 ATP8B4Q8TF62 1192 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 ZNF302Q9NR11 478 aa21.19■□□□□ 0.98
CLN3-227ENST00000567495 YBX2Q9Y2T7 364 aaKnown RBP21.19■□□□□ 0.98
CLN3-227ENST00000567495 CCDC194A0A1B0GVG4 234 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 RABGGTBP53611 331 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 C8orf34Q49A92 452 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 DBF4BQ8NFT6 615 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 APBB2Q92870 758 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 NKX2-4Q9H2Z4 354 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 KCNJ14Q9UNX9 436 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 PCDHA2Q9Y5H9 948 aa21.18■□□□□ 0.98
CLN3-227ENST00000567495 WDR64B1ANS9 1081 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 MSH4O15457 936 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 EDIL3O43854 480 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 GAS7O60861 476 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 CTSHP09668 335 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 SFNP31947 248 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 IGBP1P78318 339 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 IER5Q5VY09 327 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 PPP2R2DQ66LE6 453 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 SWSAP1Q6NVH7 229 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 RUFY4Q6ZNE9 571 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 NECAB1Q8N987 351 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 MYLIPQ8WY64 445 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 SLC5A5Q92911 643 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 NAP1L4Q99733 375 aaKnown RBP21.17■□□□□ 0.98
CLN3-227ENST00000567495 BRMS1Q9HCU9 246 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 LIMCH1Q9UPQ0 1083 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 MAFBQ9Y5Q3 323 aaPredicted RBP21.17■□□□□ 0.98
CLN3-227ENST00000567495 TANC1Q9C0D5 1861 aa21.17■□□□□ 0.98
CLN3-227ENST00000567495 COL1A2P08123 1366 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 FOSL2P15408 326 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 GCFC2P16383 781 aaKnown RBP21.16■□□□□ 0.98
CLN3-227ENST00000567495 ZNF484Q5JVG2 852 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 LRCH2Q5VUJ6 765 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 CCDC60Q8IWA6 550 aaPredicted RBP21.16■□□□□ 0.98
CLN3-227ENST00000567495 NME8Q8N427 588 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 IL27Q8NEV9 243 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 RDM1Q8NG50 284 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 FAM167AQ96KS9 214 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 MBOAT7Q96N66 472 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 TEKT3Q9BXF9 490 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 SAMM50Q9Y512 469 aa21.16■□□□□ 0.98
CLN3-227ENST00000567495 TRIP12Q14669 1992 aaPredicted RBP21.16■□□□□ 0.98
CLN3-227ENST00000567495 TLL1O43897 1013 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 CHRNA1P02708 482 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 AMHP03971 560 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 JAK3P52333 1124 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 FAM43BQ6ZT52 329 aaPredicted RBP21.15■□□□□ 0.98
CLN3-227ENST00000567495 CKAP2LQ8IYA6 745 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms