RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 LENG9Q96B70 501 aa16.96■□□□□ 0.31
CLN3-213ENST00000565047 LARP6Q9BRS8 491 aaKnown RBP16.96■□□□□ 0.31
CLN3-213ENST00000565047 LCHNA4D1U4 455 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 EFCAB14O75071 495 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 MARK3P27448 753 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 PPFIA1Q13136 1202 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 NPY5RQ15761 445 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 GRIK4Q16099 956 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 MCTP2Q6DN12 878 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 RASGRP4Q8TDF6 673 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 GAS2L1Q99501 681 aaPredicted RBP16.95■□□□□ 0.3
CLN3-213ENST00000565047 SLC26A6Q9BXS9 759 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 C6orf50Q9HD87 102 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 SH3GLB2Q9NR46 395 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 VPS54Q9P1Q0 977 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 MUC3AQ02505 3323 aa16.95■□□□□ 0.3
CLN3-213ENST00000565047 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.94■□□□□ 0.3
CLN3-213ENST00000565047 M0R2N6 131 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 DLL1O00548 723 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 CTSHP09668 335 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 INSRRP14616 1297 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 GNA11P29992 359 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 KCNJ6P48051 423 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 PLCB4Q15147 1175 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 TAF2Q6P1X5 1199 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 PLA2G4DQ86XP0 818 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 REXO1Q8N1G1 1221 aaKnown RBP16.94■□□□□ 0.3
CLN3-213ENST00000565047 CCDC12Q8WUD4 166 aaPredicted RBP16.94■□□□□ 0.3
CLN3-213ENST00000565047 GLG1Q92896 1179 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 ZBTB10Q96DT7 871 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 SDF4Q9BRK5 362 aa16.94■□□□□ 0.3
CLN3-213ENST00000565047 RFXAPO00287 272 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 TLL1O43897 1013 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 LPXNO60711 386 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 ATP4AP20648 1035 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 STAT5BP51692 787 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 HTRA4P83105 476 aaPredicted RBP16.93■□□□□ 0.3
CLN3-213ENST00000565047 RAD9AQ99638 391 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 COL25A1Q9BXS0 654 aaPredicted RBP16.93■□□□□ 0.3
CLN3-213ENST00000565047 PRDM6Q9NQX0 595 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 PDRG1Q9NUG6 133 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 TUBE1Q9UJT0 475 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 SIP14410 1827 aa16.93■□□□□ 0.3
CLN3-213ENST00000565047 RRN3P2A6NIE6 340 aa16.92■□□□□ 0.3
CLN3-213ENST00000565047 KIF28PB7ZC32 967 aa16.92■□□□□ 0.3
CLN3-213ENST00000565047 IPO5O00410 1097 aaKnown RBP16.92■□□□□ 0.3
CLN3-213ENST00000565047 ZNF76P36508 570 aa16.92■□□□□ 0.3
CLN3-213ENST00000565047 CCDC60Q8IWA6 550 aaPredicted RBP16.92■□□□□ 0.3
CLN3-213ENST00000565047 SP7Q8TDD2 431 aaPredicted RBP16.92■□□□□ 0.3
CLN3-213ENST00000565047 DNAJB3Q8WWF6 145 aa16.92■□□□□ 0.3
CLN3-213ENST00000565047 CERS4Q9HA82 394 aa16.92■□□□□ 0.3
CLN3-213ENST00000565047 MICAL3Q7RTP6 2002 aa16.92■□□□□ 0.3
CLN3-213ENST00000565047 MYO9BQ13459 2157 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 LINC01553A4QN01 128 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 ZBTB42B2RXF5 422 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 SLC26A2P50443 739 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 ANAPC15P60006 121 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 AKAP17AQ02040 695 aaKnown RBP16.91■□□□□ 0.3
CLN3-213ENST00000565047 SCRN1Q12765 414 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 LPIN1Q14693 890 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 CCDC148Q8NFR7 591 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 BICD2Q8TD16 824 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 SEPT8Q92599 483 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 TOP1MTQ969P6 601 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 AIFM3Q96NN9 605 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 AZI2Q9H6S1 392 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 TPCN1Q9ULQ1 816 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 PCDHA2Q9Y5H9 948 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 MTCH2Q9Y6C9 303 aa16.91■□□□□ 0.3
CLN3-213ENST00000565047 DEXIO95424 95 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 IGFBP4P22692 258 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 USP11P51784 963 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 SETQ01105 290 aaPredicted RBP16.9■□□□□ 0.3
CLN3-213ENST00000565047 SSRP1Q08945 709 aaKnown RBP16.9■□□□□ 0.3
CLN3-213ENST00000565047 FBXO47Q5MNV8 452 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 ZNF746Q6NUN9 644 aaPredicted RBP16.9■□□□□ 0.3
CLN3-213ENST00000565047 DAGLBQ8NCG7 672 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 TRAPPC12Q8WVT3 735 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 UIMC1Q96RL1 719 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 ZNF577Q9BSK1 485 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 IFIH1Q9BYX4 1025 aaKnown RBP16.9■□□□□ 0.3
CLN3-213ENST00000565047 TBC1D22BQ9NU19 505 aa16.9■□□□□ 0.3
CLN3-213ENST00000565047 MAFBQ9Y5Q3 323 aaPredicted RBP16.9■□□□□ 0.3
CLN3-213ENST00000565047 POTEB3A0JP26 581 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 DDX39AO00148 427 aaKnown RBP16.89■□□□□ 0.29
CLN3-213ENST00000565047 PFKFB2O60825 505 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 CTDNEP1O95476 244 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 AMHP03971 560 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 ERVK-21P61565 698 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 IGBP1P78318 339 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 STK3Q13188 491 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 PRR16Q569H4 304 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 KRT40Q6A162 431 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 POTEBQ6S5H4 581 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 FAM177A1Q8N128 213 aaPredicted RBP16.89■□□□□ 0.29
CLN3-213ENST00000565047 CRIPAKQ8N1N5 446 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 ATP8B4Q8TF62 1192 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 ARNTL2Q8WYA1 636 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 APBB2Q92870 758 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 MBOAT7Q96N66 472 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms