RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 RUFY4Q6ZNE9 571 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 PLPPR4Q7Z2D5 763 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 MYOCDQ8IZQ8 938 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 TNPO1Q92973 898 aaKnown RBP19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 SDF4Q9BRK5 362 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 AGO4Q9HCK5 861 aaKnown RBP19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 PKD2L1Q9P0L9 805 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 TUBE1Q9UJT0 475 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 MUC3AQ02505 3323 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 RBAK-RBAKDNI3L0D1 243 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 EPB41L2O43491 1005 aaKnown RBP19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 CYP3A4P08684 503 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 SCG2P13521 617 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 METAP2P50579 478 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 ACTR2P61160 394 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 ITGB3BPQ13352 177 aaPredicted RBP19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 MCTP2Q6DN12 878 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 FAM117BQ6P1L5 589 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 Q6ZUG5 572 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 RSPH3Q86UC2 560 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 ADAMTS19Q8TE59 1207 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 JAKMIP1Q96N16 626 aaKnown RBP19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 SAMD11Q96NU1 681 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 IFIH1Q9BYX4 1025 aaKnown RBP19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 ZMYND12Q9H0C1 365 aa19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 COL4A4P53420 1690 aaPredicted RBP19.65■□□□□ 0.74
VPS9D1-203ENST00000563798 IGKV6D-21A0A0A0MT36 114 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 PRPF3O43395 683 aaKnown RBP19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 INSRRP14616 1297 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 CPA1P15085 419 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 MARK3P27448 753 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 EVCP57679 992 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 FGD1P98174 961 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 APOBRQ0VD83 1088 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 BLOC1S2Q6QNY1 142 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 BRF1Q92994 677 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 CCDC136Q96JN2 1154 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 PGBD1Q96JS3 809 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 AZI2Q9H6S1 392 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 TMEM260Q9NX78 707 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 SQORQ9Y6N5 450 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 SIP14410 1827 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 KAT6AQ92794 2004 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 XIRP2A4UGR9 3374 aa19.64■□□□□ 0.73
VPS9D1-203ENST00000563798 REC8O95072 547 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 RPS6KB1P23443 525 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 SLC26A2P50443 739 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 STAT5BP51692 787 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 LPIN1Q14693 890 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 PKN1Q16512 942 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 GDPD5Q8WTR4 605 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 CCDC12Q8WUD4 166 aaPredicted RBP19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 DNAJB3Q8WWF6 145 aa19.63■□□□□ 0.73
VPS9D1-203ENST00000563798 IGLV3-22A0A075B6J6 115 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 PSMA5P28066 241 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 TFF2Q03403 129 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 PLCB4Q15147 1175 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 SKIV2LQ15477 1246 aaKnown RBP19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 NTRK3Q16288 839 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 FBXO47Q5MNV8 452 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 FAM43BQ6ZT52 329 aaPredicted RBP19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 IL27Q8NEV9 243 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 HLA-CQ95604 372 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 UHRF1Q96T88 793 aaPredicted RBP19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 C17orf80Q9BSJ5 609 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 PCDHA2Q9Y5H9 948 aa19.62■□□□□ 0.73
VPS9D1-203ENST00000563798 FAM86B1E9PN63 330 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 DHX15O43143 795 aaKnown RBP19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 CCNE2O96020 404 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 FAM86B2P0C5J1 330 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 GHRP10912 638 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 MRPS6P82932 125 aaKnown RBP19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 ABHD15Q6UXT9 468 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 FBXO22Q8NEZ5 403 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 YME1L1Q96TA2 773 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 C6orf50Q9HD87 102 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 MTUS1Q9ULD2 1270 aa19.61■□□□□ 0.73
VPS9D1-203ENST00000563798 GNA11P29992 359 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 ZNF76P36508 570 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 EPC2Q52LR7 807 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 IER5Q5VY09 327 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 JAKMIP3Q5VZ66 844 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 TSHZ1Q6ZSZ6 1077 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 NME8Q8N427 588 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 RNF26Q9BY78 433 aaPredicted RBP19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 RC3H2Q9HBD1 1191 aaKnown RBP19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 NAP1L2Q9ULW6 460 aaPredicted RBP19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 CDY2AQ9Y6F7 541 aa19.6■□□□□ 0.73
VPS9D1-203ENST00000563798 KDM3AQ9Y4C1 1321 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 SMIM35A0A1B0GVV1 85 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 POTEB3A0JP26 581 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 H3BNC9 293 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 ENPP3O14638 875 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 IFNAR1P17181 557 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 CIITAP33076 1130 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 KCNQ1P51787 676 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 IGBP1P78318 339 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 POTEBQ6S5H4 581 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 PLA2G4DQ86XP0 818 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 REXO1Q8N1G1 1221 aaKnown RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms