RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CCDC65Q8IXS2 484 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 REEP2Q9BRK0 252 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 POLD4Q9HCU8 107 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 JPH1Q9HDC5 661 aaPredicted RBP23.67■■□□□ 1.38
CLN3-209ENST00000561689 IGF2BP3O00425 579 aaKnown RBP eCLIP23.66■■□□□ 1.38
CLN3-209ENST00000561689 PSMA7O14818 248 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 SFNP31947 248 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 ICAM3P32942 547 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 TPD52L1Q16890 204 aaPredicted RBP23.66■■□□□ 1.38
CLN3-209ENST00000561689 RINT1Q6NUQ1 792 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 GLIS3Q8NEA6 775 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 GTPBP4Q9BZE4 634 aaKnown RBP23.66■■□□□ 1.38
CLN3-209ENST00000561689 TBC1D7Q9P0N9 293 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 NFASCO94856 1347 aa23.66■■□□□ 1.38
CLN3-209ENST00000561689 KIF3CO14782 793 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 SERPINC1P01008 464 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 CDK11BP21127 795 aaKnown RBP23.65■■□□□ 1.38
CLN3-209ENST00000561689 HERC4Q5GLZ8 1057 aaPredicted RBP23.65■■□□□ 1.38
CLN3-209ENST00000561689 DRC7Q8IY82 874 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 MRFAP1L1Q96HT8 127 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 XPO4Q9C0E2 1151 aaKnown RBP23.65■■□□□ 1.38
CLN3-209ENST00000561689 TRPM7Q96QT4 1865 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 MANSC4A6NHS7 340 aaPredicted RBP23.65■■□□□ 1.38
CLN3-209ENST00000561689 B4DLN1 442 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 PSMD2Q13200 908 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 LRRC41Q15345 812 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 TRMT1LQ7Z2T5 733 aaKnown RBP23.65■■□□□ 1.38
CLN3-209ENST00000561689 DHTKD1Q96HY7 919 aaPredicted RBP23.65■■□□□ 1.38
CLN3-209ENST00000561689 SENP7Q9BQF6 1050 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 SLC9A2Q9UBY0 812 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 PCDHA10Q9Y5I2 948 aa23.65■■□□□ 1.38
CLN3-209ENST00000561689 FAM26FQ5R3K3 315 aa23.64■■□□□ 1.38
CLN3-209ENST00000561689 CYFIP1Q7L576 1253 aa23.64■■□□□ 1.38
CLN3-209ENST00000561689 MPHOSPH6Q99547 160 aaKnown RBP23.64■■□□□ 1.38
CLN3-209ENST00000561689 FRMD3A2A2Y4 597 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 RSPH10B2B2RC85 870 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 RSPH10BP0C881 870 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 ADORA2AP29274 412 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 C1orf186Q6ZWK4 172 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 FGFBP2Q9BYJ0 223 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 ABT1Q9ULW3 272 aaKnown RBP23.63■■□□□ 1.37
CLN3-209ENST00000561689 SLC10A3P09131 477 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 ACTR2P61160 394 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 PSMC5P62195 406 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 COBLL1Q53SF7 1204 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.63■■□□□ 1.37
CLN3-209ENST00000561689 SMAP1Q8IYB5 467 aaPredicted RBP23.63■■□□□ 1.37
CLN3-209ENST00000561689 RDM1Q8NG50 284 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 P2RX5Q93086 422 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 CPA4Q9UI42 421 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 PCDHA2Q9Y5H9 948 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 TLL2Q9Y6L7 1015 aa23.63■■□□□ 1.37
CLN3-209ENST00000561689 ARHGEF35A5YM69 484 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 TMEM150BA6NC51 233 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 UBASH3AP57075 661 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 FAM110CQ1W6H9 321 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 CDKAL1Q5VV42 579 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 SMC1BQ8NDV3 1235 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 IVNS1ABPQ9Y6Y0 642 aa23.62■■□□□ 1.37
CLN3-209ENST00000561689 LYPLA2O95372 231 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 UBA1P22314 1058 aaKnown RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 CDC25BP30305 580 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 YWHABP31946 246 aaKnown RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 PPP1R2P41236 205 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 ANKRD40Q6AI12 368 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 TTI2Q6NXR4 508 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 NAP1L5Q96NT1 182 aaPredicted RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 SH2D3AQ9BRG2 576 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 SEMA6BQ9H3T3 888 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 GABBR1Q9UBS5 961 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 SFI1A8K8P3 1242 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 TBCAO75347 108 aaKnown RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 ECM2O94769 699 aaPredicted RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 CCNE1P24864 410 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 UTP14CQ5TAP6 766 aaKnown RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 SWSAP1Q6NVH7 229 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 SFR1Q86XK3 245 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 FBXO16Q8IX29 292 aaPredicted RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 C4orf19Q8IY42 314 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 GUF1Q8N442 669 aaKnown RBP23.61■■□□□ 1.37
CLN3-209ENST00000561689 TRIM47Q96LD4 638 aa23.61■■□□□ 1.37
CLN3-209ENST00000561689 PSAPP07602 524 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 LY6KQ17RY6 165 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 GPR142Q7Z601 462 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 NRBP1Q9UHY1 535 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 FAM155AB1AL88 458 aaPredicted RBP23.6■■□□□ 1.37
CLN3-209ENST00000561689 STRNO43815 780 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 RARRES1P49788 294 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 TAF1CQ15572 869 aaPredicted RBP23.6■■□□□ 1.37
CLN3-209ENST00000561689 ZNF792Q3KQV3 632 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 PADI6Q6TGC4 694 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 ABHD15Q6UXT9 468 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 MYOCDQ8IZQ8 938 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 EEF2KMTQ96G04 330 aa23.6■■□□□ 1.37
CLN3-209ENST00000561689 DUSP9Q99956 384 aaKnown RBP23.6■■□□□ 1.37
CLN3-209ENST00000561689 DBR1Q9UK59 544 aaKnown RBP23.6■■□□□ 1.37
CLN3-209ENST00000561689 KIAA1217Q5T5P2 1943 aa23.59■■□□□ 1.37
CLN3-209ENST00000561689 BICDL2A1A5D9 508 aa23.59■■□□□ 1.37
CLN3-209ENST00000561689 CENPPQ6IPU0 288 aa23.59■■□□□ 1.37
CLN3-209ENST00000561689 IFNL1Q8IU54 200 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms