RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 POLD1P28340 1107 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 MCM7P33993 719 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 IFRD2Q12894 506 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-205ENST00000558088 USP39Q53GS9 565 aaKnown RBP4.42□□□□□ -1.7
VPS13C-205ENST00000558088 MIIPQ5JXC2 388 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 POLNQ7Z5Q5 900 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 SCYL1Q96KG9 808 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 ZNF408Q9H9D4 720 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 KIAA1522Q9P206 1035 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-205ENST00000558088 OAZ3Q9UMX2 235 aa4.42□□□□□ -1.7
VPS13C-205ENST00000558088 ESYT3A0FGR9 886 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 NKRFO15226 690 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS13C-205ENST00000558088 CDC14BO60729 498 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 CAPNS1P04632 268 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 ZNF888P0CJ79 500 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-205ENST00000558088 FGFR1P11362 822 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 ACO1P21399 889 aaKnown RBP4.41□□□□□ -1.7
VPS13C-205ENST00000558088 EPHA5P54756 1037 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 PTH1RQ03431 593 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 ARID5AQ03989 594 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 WDR72Q3MJ13 1102 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 KCNT2Q6UVM3 1135 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 NSMFQ6X4W1 530 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 FUKQ8N0W3 1084 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 NLGN4XQ8N0W4 816 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 WDR48Q8TAF3 677 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 OR14A2Q96R54 314 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 C12orf65Q9H3J6 166 aaKnown RBP4.41□□□□□ -1.7
VPS13C-205ENST00000558088 ST7Q9NRC1 585 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 NR2E1Q9Y466 385 aa4.41□□□□□ -1.7
VPS13C-205ENST00000558088 TRAV20A0A0B4J274 112 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 PABPC1P11940 636 aaKnown RBP4.4□□□□□ -1.71
VPS13C-205ENST00000558088 ETV4P43268 484 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 RRADP55042 308 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 PURAQ00577 322 aaKnown RBP4.4□□□□□ -1.71
VPS13C-205ENST00000558088 DDR2Q16832 855 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 LSM12Q3MHD2 195 aaKnown RBP4.4□□□□□ -1.71
VPS13C-205ENST00000558088 HABP4Q5JVS0 413 aaKnown RBP4.4□□□□□ -1.71
VPS13C-205ENST00000558088 AGBL4Q5VU57 503 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 STYK1Q6J9G0 422 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 LRRC47Q8N1G4 583 aaKnown RBP4.4□□□□□ -1.71
VPS13C-205ENST00000558088 ZNF503Q96F45 646 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 CD244Q9BZW8 370 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 MSL2Q9HCI7 577 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 SLC39A2Q9NP94 309 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 RIC8BQ9NVN3 520 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 C11orf21Q9P2W6 132 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 FBXO10Q9UK96 956 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 PTPN22Q9Y2R2 807 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 SLC30A1Q9Y6M5 507 aa4.4□□□□□ -1.71
VPS13C-205ENST00000558088 IL18BPO95998 194 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 HMGCRP04035 888 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 GJA4P35212 333 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 RPS19P39019 145 aaKnown RBP4.39□□□□□ -1.71
VPS13C-205ENST00000558088 HHEXQ03014 270 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 DBPQ10586 325 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-205ENST00000558088 TOP3AQ13472 1001 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-205ENST00000558088 BTBD8Q5XKL5 378 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 C1orf210Q8IVY1 113 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 HNRNPLLQ8WVV9 542 aaKnown RBP4.39□□□□□ -1.71
VPS13C-205ENST00000558088 EXTL1Q92935 676 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 DPYSL5Q9BPU6 564 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 IPPKQ9H8X2 491 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 PUF60Q9UHX1 559 aaKnown RBP4.39□□□□□ -1.71
VPS13C-205ENST00000558088 TELO2Q9Y4R8 837 aa4.39□□□□□ -1.71
VPS13C-205ENST00000558088 ACOT7O00154 380 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 AQP7O14520 342 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 APPP05067 770 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 FGRP09769 529 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 PTPN1P18031 435 aaKnown RBP4.38□□□□□ -1.71
VPS13C-205ENST00000558088 INHBEP58166 350 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 PAK1Q13153 545 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 SMN1Q16637 294 aaKnown RBP4.38□□□□□ -1.71
VPS13C-205ENST00000558088 RNF151Q2KHN1 245 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 MTDHQ86UE4 582 aaKnown RBP4.38□□□□□ -1.71
VPS13C-205ENST00000558088 ST13P5Q8NFI4 369 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-205ENST00000558088 PLEKHG4BQ96PX9 1271 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 PLA2G12BQ9BX93 195 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 TRIM8Q9BZR9 551 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 ARHGEF4Q9NR80 690 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 AURKAIP1Q9NWT8 199 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-205ENST00000558088 SRPK3Q9UPE1 567 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 ATP23Q9Y6H3 246 aa4.38□□□□□ -1.71
VPS13C-205ENST00000558088 GSTA4O15217 222 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 ARHGAP6O43182 974 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 ADH4P08319 380 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 NAT1P18440 290 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 MEOX1P50221 254 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 KCNQ1P51787 676 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 DPTQ07507 201 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 KRTAP1-1Q07627 177 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 GPR19Q15760 415 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 ARHGAP36Q6ZRI8 547 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 ANKS3Q6ZW76 656 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 CXXC5Q7LFL8 322 aaKnown RBP4.37□□□□□ -1.71
VPS13C-205ENST00000558088 OTOP2Q7RTS6 562 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 AMER2Q8N7J2 671 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 CELF2-AS1Q8N7Q2 184 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 OSBP2Q969R2 916 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 CHFRQ96EP1 664 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms