RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 SPATA31C2B4DYI2 1134 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 ENPP3O14638 875 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 FIBPO43427 364 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 ST18O60284 1047 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 MFAP1P55081 439 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 RBM10P98175 930 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 COASYQ13057 564 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 NEDD9Q14511 834 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 CBX2Q14781 532 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 GNPTABQ3T906 1256 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 FBXO47Q5MNV8 452 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 CWC27Q6UX04 472 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 CYB5R4Q7L1T6 521 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 CRIPAKQ8N1N5 446 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 EFHBQ8N7U6 833 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 SPPL3Q8TCT6 385 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 P2RX5Q93086 422 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 ZBTB10Q96DT7 871 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 PLVAPQ9BX97 442 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 LNPKQ9C0E8 428 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 RIOX1Q9H6W3 641 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 AGO3Q9H9G7 860 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 SENP2Q9HC62 589 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 RTEL1Q9NZ71 1219 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 ZBTB47Q9UFB7 747 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 USP15Q9Y4E8 981 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 CDY2AQ9Y6F7 541 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 NRCAMQ92823 1304 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 VPS13AQ96RL7 3174 aa9.45□□□□□ -0.9
CCDC88C-214ENST00000557507 DCHS1Q96JQ0 3298 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 EP300Q09472 2414 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 MBLAC1A4D2B0 266 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 GFRA3O60609 400 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 STAM2O75886 525 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 MARK3P27448 753 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 CD52P31358 61 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 NRIP1P48552 1158 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 GATMP50440 423 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 PPFIA1Q13136 1202 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 GRM4Q14833 912 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 GRIK4Q16099 956 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 PAN2Q504Q3 1202 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 MARCH8Q5T0T0 291 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 TAF2Q6P1X5 1199 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 TSHZ1Q6ZSZ6 1077 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 RBM23Q86U06 439 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 RTN4RL1Q86UN2 441 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 SUGP1Q8IWZ8 645 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 CMTR2Q8IYT2 770 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 FBXL6Q8N531 539 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 KLHL23Q8NBE8 558 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 POF1BQ8WVV4 589 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 DNAJB3Q8WWF6 145 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 ASIC4Q96FT7 647 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 DSCC1Q9BVC3 393 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 KRT23Q9C075 422 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 IL25Q9H293 177 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 TUBE1Q9UJT0 475 aa9.44□□□□□ -0.9
CCDC88C-214ENST00000557507 KCNA2P16389 499 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 TCF7P36402 384 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 MRPS6P82932 125 aaKnown RBP9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 SIGLEC14Q08ET2 396 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 HDAC1Q13547 482 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 IMMTQ16891 758 aaKnown RBP9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 NPAS4Q8IUM7 802 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 VN1R2Q8NFZ6 395 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 PPP2R3CQ969Q6 453 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 DIAPH3Q9NSV4 1193 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 FANCMQ8IYD8 2048 aa9.43□□□□□ -0.9
CCDC88C-214ENST00000557507 PNMA6FA0A0J9YX94 578 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 GSTTP1A0A1W2PQM5 241 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 ATP9AO75110 1047 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 PDGFBP01127 241 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 TMEM62Q0P6H9 643 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 PKN1Q16512 942 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 NAALADL2Q58DX5 795 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 PCNX4Q63HM2 1172 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 USP17L6PQ6QN14 398 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 RSPH3Q86UC2 560 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 PIBF1Q8WXW3 757 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 SUSD6Q92537 303 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 RPGRIP1Q96KN7 1286 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 PRRX2Q99811 253 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 SENP7Q9BQF6 1050 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 PHF7Q9BWX1 381 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 FAM49AQ9H0Q0 323 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 CNNM2Q9H8M5 875 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 HCSTQ9UBK5 93 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 CEP250Q9BV73 2442 aa9.42□□□□□ -0.9
CCDC88C-214ENST00000557507 DOCK8Q8NF50 2099 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 IGSF9BQ9UPX0 1349 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 CACNA1BQ00975 2339 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 MEIS2O14770 477 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 PER2O15055 1255 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 SCG2P13521 617 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 IGBP1P78318 339 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 TROAPQ12815 778 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 TRAF1Q13077 416 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 PTPN21Q16825 1174 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 PLEKHM2Q8IWE5 1019 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms