RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ADAM9Q13443 819 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 KCNV1Q6PIU1 500 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 LRRC57Q8N9N7 239 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 CCDC26Q8TAB7 109 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 CUL5Q93034 780 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 VCPKMTQ9H867 229 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 EMILIN3Q9NT22 766 aa17.82■□□□□ 0.44
SHMT2-231ENST00000557433 H0YGN5 161 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 PAEPP09466 180 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 HSD17B3P37058 310 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 TNNI2P48788 182 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 SMTNP53814 917 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 ERVK-9P63128 1117 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 ACTN3Q08043 901 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-231ENST00000557433 KCNH2Q12809 1159 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 FBXW10Q5XX13 1052 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 C6orf89Q6UWU4 347 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 RASGEF1CQ8N431 466 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 GLIS3Q8NEA6 775 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 HAS1Q92839 578 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 RABEP2Q9H5N1 569 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 ANKIB1Q9P2G1 1089 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 SUCLA2Q9P2R7 463 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-231ENST00000557433 JAG2Q9Y219 1238 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 TRAF3IP3Q9Y228 551 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 DIS3Q9Y2L1 958 aaKnown RBP17.81■□□□□ 0.44
SHMT2-231ENST00000557433 NFS1Q9Y697 457 aa17.81■□□□□ 0.44
SHMT2-231ENST00000557433 ZNF335Q9H4Z2 1342 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-231ENST00000557433 GOLGA6L7A0A1B0GV03 622 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 GMNCA6NCL1 334 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 PLA2G4BP0C869 781 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 ECHS1P30084 290 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 CLUL1Q15846 466 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 IRF2BP2Q7Z5L9 587 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 SLFN11Q7Z7L1 901 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 KLHL7Q8IXQ5 586 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 SCFD1Q8WVM8 642 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 SEC14L1Q92503 715 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 SPAG5Q96R06 1193 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 UBA5Q9GZZ9 404 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 METTL14Q9HCE5 456 aaKnown RBP17.8■□□□□ 0.44
SHMT2-231ENST00000557433 FAM114A2Q9NRY5 505 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 MTMR4Q9NYA4 1195 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 AFPP02771 609 aaKnown RBP17.8■□□□□ 0.44
SHMT2-231ENST00000557433 GSCP56915 257 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-231ENST00000557433 GRAPQ13588 217 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 ECM1Q16610 540 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 HERC4Q5GLZ8 1057 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-231ENST00000557433 BARGINQ6ZT62 677 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 FMNL3Q8IVF7 1028 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 GRAPLQ8TC17 118 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-231ENST00000557433 COA7Q96BR5 231 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 NAGPAQ9UK23 515 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 TTC7AQ9ULT0 858 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-231ENST00000557433 NENFQ9UMX5 172 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 SBF2Q86WG5 1849 aa17.8■□□□□ 0.44
SHMT2-231ENST00000557433 MYO3BQ8WXR4 1341 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 E7EVH7 732 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 CEP104O60308 925 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 RPS6KA4O75676 772 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 CTNNA1P35221 906 aaKnown RBP17.79■□□□□ 0.44
SHMT2-231ENST00000557433 EIF3BP55884 814 aaKnown RBP17.79■□□□□ 0.44
SHMT2-231ENST00000557433 PTK2Q05397 1052 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 MOXD1Q6UVY6 613 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 GPBP1Q86WP2 473 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 SLFN12Q8IYM2 578 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 TPCN2Q8NHX9 752 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 CDK5RAP2Q96SN8 1893 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 PACSIN1Q9BY11 444 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 CNOT10Q9H9A5 744 aaKnown RBP17.79■□□□□ 0.44
SHMT2-231ENST00000557433 ARMCX3Q9UH62 379 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-231ENST00000557433 SLC12A6Q9UHW9 1150 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 HDAC9Q9UKV0 1011 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 NRAPQ86VF7 1730 aa17.79■□□□□ 0.44
SHMT2-231ENST00000557433 GTPBP10A4D1E9 387 aaKnown RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 C5orf60A6NFR6 353 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 SLC16A3O15427 465 aaKnown RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 SART1O43290 800 aaKnown RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 TRAPPC3O43617 180 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 CALUO43852 315 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 ZPR1O75312 459 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 UCHL3P15374 230 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 CYP11B2P19099 503 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 ZNF844Q08AG5 666 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 GPATCH4Q5T3I0 446 aaKnown RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 ALKBH5Q6P6C2 394 aaKnown RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 CCDC50Q8IVM0 306 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 CYFIP2Q96F07 1278 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 PACSIN2Q9UNF0 486 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 GAKO14976 1311 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 STRCQ7RTU9 1775 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 IGKV6D-41A0A0C4DH26 115 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 SSBP05455 408 aaKnown RBP eCLIP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 H2AFZP0C0S5 128 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 ZBTB48P10074 688 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 NR2F2P24468 414 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 DNA2P51530 1060 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 PPP2R2AP63151 447 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 ARID5AQ03989 594 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 PDE4CQ08493 712 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms