RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CTTN	Q14247	550 aa	Known RBP	5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	C10orf76	Q5T2E6	689 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	SUSD4	Q5VX71	490 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	NCAPG	Q9BPX3	1015 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	EMILIN3	Q9NT22	766 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	MON2	Q7Z3U7	1717 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005		A0A1W2PQC6	194 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	TTI1	O43156	1089 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	MYL1	P05976	194 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	PSMC2	P35998	433 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	LONRF1	Q17RB8	773 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	CYP4F22	Q6NT55	531 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	UNC13D	Q70J99	1090 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	USP37	Q86T82	979 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	LONP2	Q86WA8	852 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	DDX42	Q86XP3	938 aa	Known RBP eCLIP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZNF653	Q96CK0	615 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	FNBP1	Q96RU3	617 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	CELF4	Q9BZC1	486 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	GEMIN8	Q9NWZ8	242 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ADAMTS1	Q9UHI8	967 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	PNMA2	Q9UL42	364 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	RABGAP1	Q9Y3P9	1069 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	STK24	Q9Y6E0	443 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	BZW2	Q9Y6E2	419 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005		A0A087X0B3	334 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	STAM2	O75886	525 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	KIT	P10721	976 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	PIK3CA	P42336	1068 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	DYNLT1	P63172	113 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	STRN3	Q13033	797 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	PDE1C	Q14123	709 aa	Predicted RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	MDH1B	Q5I0G3	518 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ARL6IP4	Q66PJ3	421 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	NUGGC	Q68CJ6	796 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZC3H18	Q86VM9	953 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	TTLL11	Q8NHH1	800 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ABTB1	Q969K4	478 aa	Predicted RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	RUNDC3B	Q96NL0	473 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	YY1AP1	Q9H869	796 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	KIF9	Q9HAQ2	790 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	RNF14	Q9UBS8	474 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	TCP11X1	B4DZS4	312 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	CFB	P00751	764 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	PHB	P35232	272 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	RANBP1	P43487	201 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	CRKL	P46109	303 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	DDB1	Q16531	1140 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	EP400NL	Q6ZTU2	488 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ARMC9	Q7Z3E5	817 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	MMGT1	Q8N4V1	131 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	CNKSR2	Q8WXI2	1034 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	DYDC2	Q96IM9	177 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	LBHD1	Q9BQE6	289 aa	Predicted RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	SPZ1	Q9BXG8	430 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	RIC8A	Q9NPQ8	531 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ATP8A2	Q9NTI2	1148 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	TYW1	Q9NV66	732 aa	Known RBP	5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	AMACR	Q9UHK6	382 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZFP69B	Q9UJL9	534 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	HPSE	Q9Y251	543 aa		5.4	□□□□□ -1.55
SYNE2-223	ENST00000557005	HSD17B3	P37058	310 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	SCNN1D	P51172	638 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	PMS1	P54277	932 aa	Known RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	RAD23B	P54727	409 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	EIF3B	P55884	814 aa	Known RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	MDM2	Q00987	491 aa	Predicted RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	TMED1	Q13445	227 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	MIER3	Q7Z3K6	550 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	TEX2	Q8IWB9	1127 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	FAM186B	Q8IYM0	893 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	CFAP61	Q8NHU2	1237 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	MAIP1	Q8WWC4	291 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	DNAJC7	Q99615	494 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	GOLPH3	Q9H4A6	298 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	TMBIM4	Q9HC24	238 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	PPP1R1B	Q9UD71	204 aa	Predicted RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	GGA1	Q9UJY5	639 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	EXOC7	Q9UPT5	735 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	ENO4	A6NNW6	628 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	GOLGA8S	H3BPF8	625 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	GOLGA8M	H3BSY2	632 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	NOL3	O60936	208 aa	Known RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	KRT1	P04264	644 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	PSMD2	Q13200	908 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	EPM2AIP1	Q7L775	607 aa	Predicted RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	RFX6	Q8HWS3	928 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	ADSSL1	Q8N142	457 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	CEP120	Q8N960	986 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	CCHCR1	Q8TD31	782 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	MAML1	Q92585	1016 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	P3H4	Q92791	437 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	DDX27	Q96GQ7	796 aa	Known RBP	5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	CYTH2	Q99418	400 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	C3	P01024	1663 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	SALL1	Q9NSC2	1324 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	SLIT1	O75093	1534 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	GOLGA8IP	A6NC78	632 aa		5.39	□□□□□ -1.55
SYNE2-223	ENST00000557005	GOLGA8J	A6NMD2	632 aa		5.39	□□□□□ -1.55

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