RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PDCD4Q53EL6 469 aaKnown RBP15□□□□□ -0.01
SHMT2-226ENST00000556825 OTUD6AQ7L8S5 288 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 ECHDC1Q9NTX5 307 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 EXOC1Q9NV70 894 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 FAIMQ9NVQ4 179 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 SMARCAL1Q9NZC9 954 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 GGT7Q9UJ14 662 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 FADS3Q9Y5Q0 445 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 ARHGEF10O15013 1369 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 RIMS1Q86UR5 1692 aaKnown RBP14.99□□□□□ -0.01
SHMT2-226ENST00000556825 CHL1O00533 1208 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 CHN1P15882 459 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 GM2AP17900 193 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 RASA1P20936 1047 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 ZC3H18Q86VM9 953 aaKnown RBP14.99□□□□□ -0.01
SHMT2-226ENST00000556825 RETREG2Q8NC44 543 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 SUPT20HQ8NEM7 779 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 NELFBQ8WX92 580 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 MPP4Q96JB8 637 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 MAK16Q9BXY0 300 aaKnown RBP14.99□□□□□ -0.01
SHMT2-226ENST00000556825 THAP9Q9H5L6 903 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 RXFP1Q9HBX9 757 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 BTBD7Q9P203 1132 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 PNMA3Q9UL41 463 aa14.99□□□□□ -0.01
SHMT2-226ENST00000556825 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-226ENST00000556825 O00370 1275 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 WNT7AO00755 349 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 LYNP07948 512 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 FDPSP14324 419 aaKnown RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 S100A1P23297 94 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 SERPINB3P29508 390 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 CYLC1P35663 651 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 CDK7P50613 346 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 CYLC2Q14093 348 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 CHADLQ6NUI6 762 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 NME9Q86XW9 330 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 GDAP1Q8TB36 358 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 MAP2P11137 1827 aaKnown RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 RFX7Q2KHR2 1363 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 MYH13Q9UKX3 1938 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 MACROD2A1Z1Q3 448 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 SUN1O94901 812 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 PABPC4LP0CB38 370 aaKnown RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 CYP4A11Q02928 519 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 MTMR3Q13615 1198 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 NFRKBQ6P4R8 1299 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 AGGF1Q8N302 714 aaeCLIP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 UHMK1Q8TAS1 419 aaKnown RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 DNAJC7Q99615 494 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 SYNCQ9H7C4 482 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 PHAXQ9H814 394 aaKnown RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 DCLRE1BQ9H816 532 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 EHD2Q9NZN4 543 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 RNF14Q9UBS8 474 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 MED23Q9ULK4 1368 aa14.98□□□□□ -0.01
SHMT2-226ENST00000556825 EDC4Q6P2E9 1401 aaKnown RBP14.98□□□□□ -0.01
SHMT2-226ENST00000556825 CCDC162PA2VCL2 907 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 MAGEB3O15480 346 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 KDM1AO60341 852 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 ECE2O60344 883 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 SERPINB7O75635 380 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 R3HDM1Q15032 1099 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 OTUD7BQ6GQQ9 843 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 C14orf80Q86SX3 495 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 SCG3Q8WXD2 468 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 DPH5Q9H2P9 285 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 MRPL46Q9H2W6 279 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 ETNK1Q9HBU6 452 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 LIMA1Q9UHB6 759 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 FBXO9Q9UK97 447 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 RPL26L1Q9UNX3 145 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 AMOTL2Q9Y2J4 779 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 FAM32AQ9Y421 112 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 DUSP10Q9Y6W6 482 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 ITSN1Q15811 1721 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 PTPRUQ92729 1446 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 MAP3K15Q6ZN16 1313 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 A0A0D9SFI3 127 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 DYTNA2CJ06 578 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 UNC5CO95185 931 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 GJB6O95452 261 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 GALK1P51570 392 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 SPIDRQ14159 915 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 CFAP221Q4G0U5 840 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 MARK2Q7KZI7 788 aaKnown RBP14.97□□□□□ -0.01
SHMT2-226ENST00000556825 PPP1R42Q7Z4L9 355 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 SLC7A5P1Q8MH63 180 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 SCAIQ8N9R8 606 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 FAM13CQ8NE31 585 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 GPATCH3Q96I76 525 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 DKK3Q9UBP4 350 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 CARD8Q9Y2G2 431 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 AKAP12Q02952 1782 aa14.97□□□□□ -0.01
SHMT2-226ENST00000556825 WDR75Q8IWA0 830 aaKnown RBP14.96□□□□□ -0.01
SHMT2-226ENST00000556825 LRRC8CQ8TDW0 803 aa14.96□□□□□ -0.01
SHMT2-226ENST00000556825 GFM2Q969S9 779 aaKnown RBP14.96□□□□□ -0.01
SHMT2-226ENST00000556825 LRRC2Q9BYS8 371 aa14.96□□□□□ -0.01
SHMT2-226ENST00000556825 NACAP1Q9BZK3 213 aa14.96□□□□□ -0.01
SHMT2-226ENST00000556825 DRC3Q9H069 523 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms