RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 GLYCTKQ8IVS8 523 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 FAM186BQ8IYM0 893 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 BANK1Q8NDB2 785 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 PLAGL2Q9UPG8 496 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 ZNF263O14978 683 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 SPOPO43791 374 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 SLCO1A2P46721 670 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 KCNA1Q09470 495 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 PPM1KQ8N3J5 372 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 ZNF507Q8TCN5 953 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 MGARPQ8TDB4 240 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 HOOK2Q96ED9 719 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 FAM212AQ96EL1 285 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 ATP8A1Q9Y2Q0 1164 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 BMP3P12645 472 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 CHRNA5P30532 468 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 GUCY1A3Q02108 690 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 TNIP1Q15025 636 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 CPLX4Q7Z7G2 160 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 MSANTD4Q8NCY6 345 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 ARL8AQ96BM9 186 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 PAIP2Q9BPZ3 127 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 REEP2Q9BRK0 252 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 K7ENM7 598 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 ADRA2BP18089 450 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 MESDQ14696 234 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 MIIPQ5JXC2 388 aa13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 DHX36Q9H2U1 1008 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-211ENST00000556726 EPHB4P54760 987 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 LAMA4Q16363 1823 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 AOC3Q16853 763 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 CENPPQ6IPU0 288 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 DYDC2Q96IM9 177 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 AMACRQ9UHK6 382 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 ATP6V0A2Q9Y487 856 aa13.27□□□□□ -0.28
CCDC88C-211ENST00000556726 DLATP10515 647 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 CASP5P51878 434 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 PPP4CP60510 307 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 PTK2Q05397 1052 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 TRADDQ15628 312 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 QTRT2Q9H974 415 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 DDTLA6NHG4 134 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 NR3C1P04150 777 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 GYS1P13807 737 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 TAB3Q8N5C8 712 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 ERGIC2Q96RQ1 377 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 LRRC4BQ9NT99 713 aa13.27□□□□□ -0.29
CCDC88C-211ENST00000556726 MYO5AQ9Y4I1 1855 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 GOLGA6L10A0A0M3HER8 536 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 TESPA1A2RU30 521 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 TM4SF1P30408 202 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 INPP5BP32019 993 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 SSTR3P32745 418 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 IFNAR2P48551 515 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 PLTPP55058 493 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 RHBDL3P58872 404 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 SYDE2Q5VT97 1194 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 WDR78Q5VTH9 848 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 CATSPER3Q86XQ3 398 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 CCDC50Q8IVM0 306 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 CELF4Q9BZC1 486 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 CEP72Q9P209 647 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 PI4KBQ9UBF8 816 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 AMFRQ9UKV5 643 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 H0YIN7 160 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 GCOM1H8Y6P7 765 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 MYZAPP0CAP1 466 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 STXBP4Q6ZWJ1 553 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 SLFN12Q8IYM2 578 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 COA1Q9GZY4 146 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 SALL4Q9UJQ4 1053 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 CAPN7Q9Y6W3 813 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 ANO9A1A5B4 782 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 NDUFB10O96000 172 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 FGGP02679 453 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 LARGE2Q8N3Y3 721 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 LMBR1Q8WVP7 490 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 TMOD4Q9NZQ9 345 aa13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 ZBTB12Q9Y330 459 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-211ENST00000556726 GNA14O95837 355 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 GLI1P08151 1106 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CYP11B2P19099 503 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 RDXP35241 583 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 ECE1P42892 770 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 IFT88Q13099 833 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 SNX1Q13596 522 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CAPN12Q6ZSI9 719 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 ZNF577Q9BSK1 485 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 FBXO28Q9NVF7 368 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 USTQ9Y2C2 406 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 ABCC6O95255 1503 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM153BP0C7A2 387 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 GCLMP48507 274 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 SEC24CP53992 1094 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 KNOP1Q1ED39 458 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM153CQ494X1 144 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CERS5Q8N5B7 392 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 ARHGEF10LQ9HCE6 1279 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 UBE2TQ9NPD8 197 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms