RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CCDC60Q8IWA6 550 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 CAGE1Q8TC20 777 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 HERVK_113Q902F9 699 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 TNFRSF25Q93038 417 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 FAM161BQ96MY7 647 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 SMARCAD1Q9H4L7 1026 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 ERAP1Q9NZ08 941 aa13.14□□□□□ -0.31
CCDC88C-208ENST00000554165 EMSYQ7Z589 1322 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 IGKV6D-21A0A0A0MT36 114 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 BTBD18B2RXH4 712 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 WNT7AO00755 349 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 BACH1O14867 736 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 INSRRP14616 1297 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 STAT5BP51692 787 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 SETQ01105 290 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 RABEP1Q15276 862 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 GRIK4Q16099 956 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 LETM2Q2VYF4 491 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 KRT40Q6A162 431 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 SWSAP1Q6NVH7 229 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 TRMT1LQ7Z2T5 733 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 KRT25Q7Z3Z0 450 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 RPUSD2Q8IZ73 545 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 DEFB123Q8N688 67 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 AFAP1L1Q8TED9 768 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 WASF1Q92558 559 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 SLC5A5Q92911 643 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 TBC1D32Q96NH3 1257 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 FTOQ9C0B1 505 aaKnown RBP eCLIP13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 AZI2Q9H6S1 392 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 KAT6AQ92794 2004 aa13.13□□□□□ -0.31
CCDC88C-208ENST00000554165 CYP3A7-CYP3A51PA0A087WV96 503 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 CCDC194A0A1B0GVG4 234 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 ZBBXA8MT70 800 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 CHMP2AO43633 222 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 XBP1P17861 261 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 CYP3A7P24462 503 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 RABGGTBP53611 331 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 Q4G0T1 1027 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 PLPPR4Q7Z2D5 763 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 TMCO2Q7Z6W1 182 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 FAM177A1Q8N128 213 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 CCDC155Q8N6L0 562 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 ETNPPLQ8TBG4 499 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 MBOAT7Q96N66 472 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 UNC45AQ9H3U1 944 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 TBC1D22BQ9NU19 505 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 DDX25Q9UHL0 483 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 TRPC6Q9Y210 931 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 TANC1Q9C0D5 1861 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 NRCAMQ92823 1304 aa13.12□□□□□ -0.31
CCDC88C-208ENST00000554165 MYO9BQ13459 2157 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 POTEB3A0JP26 581 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 PSMD10O75832 226 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 MMP1P03956 469 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 MYOGP15173 224 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 KRT2P35908 639 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 SMAD3P84022 425 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 UGCGQ16739 394 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 ZNF746Q6NUN9 644 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 MIS18BP1Q6P0N0 1132 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 PDXDC2PQ6P474 469 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 POTEBQ6S5H4 581 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 DIS3L2Q8IYB7 885 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 ZSCAN31Q96LW9 406 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 FAM49AQ9H0Q0 323 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 TTYH1Q9H313 450 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 ZNF302Q9NR11 478 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 GABBR1Q9UBS5 961 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 TUBE1Q9UJT0 475 aa13.11□□□□□ -0.31
CCDC88C-208ENST00000554165 MBLAC1A4D2B0 266 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 RSPH10B2B2RC85 870 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 ZBTB42B2RXF5 422 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 ZNF862O60290 1169 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 CCNT1O60563 726 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 GAS7O60861 476 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 CHRNA1P02708 482 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 CXCL10P02778 98 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 RSPH10BP0C881 870 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 GNAT1P11488 350 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 RFC2P35250 354 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 KRT76Q01546 638 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 LRCH2Q5VUJ6 765 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 NEK8Q86SG6 692 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 DNAJB3Q8WWF6 145 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 TMX3Q96JJ7 454 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 RIT2Q99578 217 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 PBX4Q9BYU1 374 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 BACH2Q9BYV9 841 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 UPF2Q9HAU5 1272 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 SH2B1Q9NRF2 756 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 DISC1Q9NRI5 854 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 MTMR10Q9NXD2 777 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 YBX2Q9Y2T7 364 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 SAMM50Q9Y512 469 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 SLC4A7Q9Y6M7 1214 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 CHD9Q3L8U1 2897 aa13.1□□□□□ -0.31
CCDC88C-208ENST00000554165 WDR64B1ANS9 1081 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms