RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 FAM160B1Q5W0V3 765 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 PLPPR4Q7Z2D5 763 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 BANK1Q8NDB2 785 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 ERMNQ8TAM6 284 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 AFAP1L1Q8TED9 768 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 KAT2BQ92831 832 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 AK8Q96MA6 479 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 CLIC6Q96NY7 704 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 HSD17B14Q9BPX1 270 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 EIF2AK1Q9BQI3 630 aaKnown RBP13.75□□□□□ -0.21
SHMT2-209ENST00000553949 CSRNP2Q9H175 543 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 SMARCAD1Q9H4L7 1026 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 GDPD2Q9HCC8 539 aa13.75□□□□□ -0.21
SHMT2-209ENST00000553949 MAFBQ9Y5Q3 323 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-209ENST00000553949 IGSF9BQ9UPX0 1349 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 H3BRB1 525 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 CABYRO75952 493 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 SLITRK3O94933 977 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 P4HBP07237 508 aaKnown RBP13.74□□□□□ -0.21
SHMT2-209ENST00000553949 EN2P19622 333 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-209ENST00000553949 CDC25AP30304 524 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 QARSP47897 775 aaKnown RBP13.74□□□□□ -0.21
SHMT2-209ENST00000553949 PSMC5P62195 406 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 CYP4A11Q02928 519 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 UGCGQ16739 394 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 HAUS3Q68CZ6 603 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 PDXDC2PQ6P474 469 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 NEK9Q8TD19 979 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 ATP6V0A1Q93050 837 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 DYDC2Q96IM9 177 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 TUT1Q9H6E5 874 aaKnown RBP13.74□□□□□ -0.21
SHMT2-209ENST00000553949 ERAP1Q9NZ08 941 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 RGL1Q9NZL6 768 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 ZNF215Q9UL58 517 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-209ENST00000553949 PCDHA7Q9UN72 937 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 STK24Q9Y6E0 443 aa13.74□□□□□ -0.21
SHMT2-209ENST00000553949 MYH15Q9Y2K3 1946 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 A0A1W2PQ45 241 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 A0A1W2PQY0 241 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 CCDC85CA6NKD9 419 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 CUTAO60888 179 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 MED24O75448 989 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 SPATA31C1P0DKV0 1188 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 MARK3P27448 753 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 UBA7P41226 1012 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 PSEN2P49810 448 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 SLC26A2P50443 739 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 PSMC6P62333 389 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 CTTNQ14247 550 aaKnown RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 MFSD10Q14728 455 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 KIAA0753Q2KHM9 967 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 SPECC1Q5M775 1068 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 AXDND1Q5T1B0 1012 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 KRT79Q5XKE5 535 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 CATSPER3Q86XQ3 398 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 TPH2Q8IWU9 490 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 ZNF579Q8NAF0 562 aaKnown RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 SNX29Q8TEQ0 813 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 DIS3LQ8TF46 1054 aaKnown RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 GLT1D1Q96MS3 346 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 LXNQ9BS40 222 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 MMTAG2Q9BU76 263 aaKnown RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 POLR3CQ9BUI4 534 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-209ENST00000553949 KATNAL1Q9BW62 490 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 ZSWIM4Q9H7M6 989 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 TUFT1Q9NNX1 390 aa13.73□□□□□ -0.21
SHMT2-209ENST00000553949 DOCK5Q9H7D0 1870 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 FRMPD3Q5JV73 1810 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 HAS3O00219 553 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 ZNF862O60290 1169 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 DKC1O60832 514 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-209ENST00000553949 COL6A1P12109 1028 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 ATP4AP20648 1035 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 RPA1P27694 616 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 CCT6AP40227 531 aaKnown RBP13.72□□□□□ -0.21
SHMT2-209ENST00000553949 CHMP4BP1P59074 171 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 CSPP1Q1MSJ5 1256 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 CLEC17AQ6ZS10 378 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 USP49Q70CQ1 688 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 CABP7Q86V35 215 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 CKAP2LQ8IYA6 745 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 SYMPKQ92797 1274 aaKnown RBP13.72□□□□□ -0.21
SHMT2-209ENST00000553949 VTI1AQ96AJ9 217 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 EPSTI1Q96J88 318 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 RNPEPQ9H4A4 650 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 STARD7Q9NQZ5 370 aa13.72□□□□□ -0.21
SHMT2-209ENST00000553949 WRAP73Q9P2S5 460 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-209ENST00000553949 GRIN2DO15399 1336 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 POTEB3A0JP26 581 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 SLC26A4O43511 780 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 STBD1O95210 358 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 OATP04181 439 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 SOX10P56693 466 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 PRKCEQ02156 737 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 PLCB4Q15147 1175 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 ZRSR1Q15695 479 aaKnown RBP13.71□□□□□ -0.21
SHMT2-209ENST00000553949 ECM1Q16610 540 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 NBPF20Q3BBV1 942 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 ADALQ6DHV7 355 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 POTEBQ6S5H4 581 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms