RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 SNX29Q8TEQ0 813 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 NUP133Q8WUM0 1156 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 GTF3C6Q969F1 213 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 MKL1Q969V6 931 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 MYRFLQ96LU7 910 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 TMEM39BQ9GZU3 492 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 SH2D4AQ9H788 454 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 AS3MTQ9HBK9 375 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 MTMR4Q9NYA4 1195 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 CLIP2Q9UDT6 1046 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 PGAP2Q9UHJ9 254 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 SALL4Q9UJQ4 1053 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 BRPF3Q9ULD4 1205 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 STX8Q9UNK0 236 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 USTQ9Y2C2 406 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 ATP6V1DQ9Y5K8 247 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 TACC3Q9Y6A5 838 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 SHTN1A0MZ66 631 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 UNCXA6NJT0 531 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 SART1O43290 800 aaKnown RBP5.79□□□□□ -1.48
VTI1B-202ENST00000553619 COBLO75128 1261 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 PARP1P09874 1014 aaKnown RBP5.79□□□□□ -1.48
VTI1B-202ENST00000553619 EDN3P14138 238 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 AKR1B1P15121 316 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 IFNAR1P17181 557 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 GJB2P29033 226 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 PREPP48147 710 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 NOVP48745 357 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 NLRP12P59046 1061 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 ATP2B2Q01814 1243 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 SCRN1Q12765 414 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 TRAF1Q13077 416 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 TRIM29Q14134 588 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 RAB3GAP1Q15042 981 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 EAPPQ56P03 285 aaPredicted RBP5.79□□□□□ -1.48
VTI1B-202ENST00000553619 GPATCH4Q5T3I0 446 aaKnown RBP5.79□□□□□ -1.48
VTI1B-202ENST00000553619 XKR5Q6UX68 686 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 MIGA2Q7L4E1 593 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 ARMC9Q7Z3E5 817 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 KRT26Q7Z3Y9 468 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 MICU3Q86XE3 530 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 NECAB1Q8N987 351 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 SLC44A5Q8NCS7 719 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 CEP95Q96GE4 821 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 TMEM47Q9BQJ4 181 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 TAF1DQ9H5J8 278 aaPredicted RBP5.79□□□□□ -1.48
VTI1B-202ENST00000553619 IL17RBQ9NRM6 502 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 GGA3Q9NZ52 723 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 CNTNAP1P78357 1384 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 PLIN4Q96Q06 1357 aa5.79□□□□□ -1.48
VTI1B-202ENST00000553619 WDR33Q9C0J8 1336 aaKnown RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 IGKV6D-41A0A0C4DH26 115 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 TMEM88BA6NKF7 163 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 C19orf81C9J6K1 198 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 H3BQV1 296 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 SMIM22K7EJ46 135 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 PRPF3O43395 683 aaKnown RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ADAMTS4O75173 837 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 DEXIO95424 95 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 GH2P01242 217 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 PTMSP20962 102 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 USP14P54578 494 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ICA1Q05084 483 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 PDE4CQ08493 712 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 TROAPQ12815 778 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ASPRV1Q53RT3 343 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 NBPF12Q5TAG4 269 aaPredicted RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 HGSNATQ68CP4 663 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 RNF43Q68DV7 783 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 FAM20CQ8IXL6 584 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 FAM177A1Q8N128 213 aaPredicted RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 SMARCC2Q8TAQ2 1214 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 DCAF4Q8WV16 495 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 WNT8BQ93098 351 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 TEPSINQ96N21 525 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 RNF26Q9BY78 433 aaPredicted RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 CHRDQ9H2X0 955 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ZSCAN16Q9H4T2 348 aaPredicted RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 PICK1Q9NRD5 415 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 DZANK1Q9NVP4 752 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ORC3Q9UBD5 711 aaPredicted RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ZNF112Q9UJU3 913 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 POLIQ9UNA4 740 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 OAS3Q9Y6K5 1087 aaKnown RBP5.78□□□□□ -1.48
VTI1B-202ENST00000553619 NID2Q14112 1375 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 ADAMTSL1Q8N6G6 1762 aa5.78□□□□□ -1.48
VTI1B-202ENST00000553619 STK36Q9NRP7 1315 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 DDX60LQ5H9U9 1706 aaKnown RBP5.77□□□□□ -1.49
VTI1B-202ENST00000553619 WDR90Q96KV7 1748 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 PTPDC1A2A3K4 754 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 KLRF2D3W0D1 207 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 GOLGA6L22H0YM25 854 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 hCG_1984214I3L0E3 225 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 PDE2AO00408 941 aaPredicted RBP5.77□□□□□ -1.49
VTI1B-202ENST00000553619 STX6O43752 255 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 NMT2O60551 498 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 USP2O75604 605 aaPredicted RBP5.77□□□□□ -1.49
VTI1B-202ENST00000553619 LARGE1O95461 756 aa5.77□□□□□ -1.49
VTI1B-202ENST00000553619 EEF2P13639 858 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms