RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LIG3P49916 1009 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 NDUFA8P51970 172 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 BAATQ14032 418 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-216ENST00000552909 WWC2Q6AWC2 1192 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 CCDC82Q8N4S0 544 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 FAM133AQ8N9E0 248 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 MTMR8Q96EF0 704 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 PIGSQ96S52 555 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 RIOX1Q9H6W3 641 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 SLC5A4Q9NY91 659 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 CDC23Q9UJX2 597 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 DIS3Q9Y2L1 958 aaKnown RBP8.52□□□□□ -1.05
LIMA1-216ENST00000552909 RNF40O75150 1001 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 TFRCP02786 760 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 FDPSP14324 419 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 FOSBP53539 338 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 MYL5Q02045 173 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 MLLT1Q03111 559 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 TUBB2AQ13885 445 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 SF3A1Q15459 793 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 RTN1Q16799 776 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 TKFCQ3LXA3 575 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 CPLX2Q6PUV4 134 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 TOGARAM2Q6ZUX3 1019 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 SRBD1Q8N5C6 995 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 CTCFLQ8NI51 663 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 TUBB2BQ9BVA1 445 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 CRISPLD2Q9H0B8 497 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 SZT2Q5T011 3432 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 hCG_1642624A0A1W2PR95 340 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 EBAG9O00559 213 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 OPLAHO14841 1288 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 DDAH1O94760 285 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 MNX1P50219 401 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 RPS6P62753 249 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 KARSQ15046 597 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 ISM2Q6H9L7 571 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 SLC30A10Q6XR72 485 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 FBXO11Q86XK2 927 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 CNPY4Q8N129 248 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 PDILTQ8N807 584 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 DIS3LQ8TF46 1054 aaKnown RBP8.51□□□□□ -1.05
LIMA1-216ENST00000552909 PHKBQ93100 1093 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 HSD3B7Q9H2F3 369 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 VIPAS39Q9H9C1 493 aa8.51□□□□□ -1.05
LIMA1-216ENST00000552909 MYH15Q9Y2K3 1946 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 ZBTB5O15062 677 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 CDKL5O76039 1030 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 RHOXF2BP0C7M4 288 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 ZNF865P0CJ78 1059 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-216ENST00000552909 CALML3P27482 149 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 VSNL1P62760 191 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 NTRK3Q16288 839 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 SKIDA1Q1XH10 827 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 KCNV1Q6PIU1 500 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 MAMDC4Q6UXC1 1216 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 UBE2Q1Q7Z7E8 422 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 GIMAP7Q8NHV1 300 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 LENG1Q96BZ8 264 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-216ENST00000552909 MAP3K14Q99558 947 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 RHOXF2Q9BQY4 288 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 SLC26A6Q9BXS9 759 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 RTEL1Q9NZ71 1219 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 FAM169AQ9Y6X4 670 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 PFASO15067 1338 aa8.5□□□□□ -1.05
LIMA1-216ENST00000552909 LRRIQ3A6PVS8 624 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 ADCY6O43306 1168 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 KIF5CO60282 957 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CCDC175P0C221 793 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CALM1P0DP23 149 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CALM2P0DP24 149 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CALM3P0DP25 149 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 AARSP49588 968 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 GUCY1B3Q02153 619 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 SSRP1Q08945 709 aaKnown RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 STK38Q15208 465 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 FBXW10Q5XX13 1052 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 GBP6Q6ZN66 633 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 RNF207Q6ZRF8 634 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 ARMCX2Q7L311 632 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 KCNG4Q8TDN1 519 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 AMNQ9BXJ7 453 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 COL20A1Q9P218 1284 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 DDX20Q9UHI6 824 aaKnown RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 OGDHLQ9ULD0 1010 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 PCDHA1Q9Y5I3 950 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 SYNGAP1Q96PV0 1343 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CCDC189A1A4V9 331 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CTAGE15A4D2H0 777 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 SEPT4O43236 478 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 ZNF202O95125 648 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CTAGE8P0CG41 777 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 IFNAR1P17181 557 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 KIF5BP33176 963 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CCT5P48643 541 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 RCAN1P53805 252 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 TBX2Q13207 712 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 PPP2R5BQ15173 497 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 TMEM63BQ5T3F8 832 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms