RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691	ZNF143	P52747	638 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	TNK2	Q07912	1038 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	TM4SF20	Q53R12	229 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	DLK2	Q6UY11	383 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	C2CD5	Q86YS7	1000 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	CERS3	Q8IU89	383 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	CCDC146	Q8IYE0	955 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	SYNE4	Q8N205	404 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	SMARCC1	Q92922	1105 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	ALPK1	Q96QP1	1244 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	PPP1R16B	Q96T49	567 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	SLC9A7	Q96T83	725 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	KIF2C	Q99661	725 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	AARSD1	Q9BTE6	412 aa	Known RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	CNNM2	Q9H8M5	875 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	DCP1A	Q9NPI6	582 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	SFMBT1	Q9UHJ3	866 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	FAN1	Q9Y2M0	1017 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	MEGF6	O75095	1541 aa		4.87	□□□□□ -1.63
LIMA1-208	ENST00000551691	C4A	P0C0L4	1744 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	UPK3BL1	B0FP48	263 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	UPK3BL2	E5RIL1	263 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	POLRMT	O00411	1230 aa	Known RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	TNFRSF10C	O14798	259 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	PLD2	O14939	933 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	PRC1	O43663	620 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	CLEC3A	O75596	197 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	L1CAM	P32004	1257 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	CCNF	P41002	786 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	CDCP2	Q5VXM1	449 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	TDRD10	Q5VZ19	366 aa	Known RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	HID1	Q8IV36	788 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	CCDC144CP	Q8IYA2	1237 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	AHI1	Q8N157	1196 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	PPM1K	Q8N3J5	372 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	UBR7	Q8N806	425 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	FBXO15	Q8NCQ5	510 aa	Predicted RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	ABHD4	Q8TB40	342 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	STAG1	Q8WVM7	1258 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	IP6K1	Q92551	441 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	ZNF622	Q969S3	477 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	SLC6A18	Q96N87	628 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	IER2	Q9BTL4	223 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	DHRS4	Q9BTZ2	278 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	MKRN2	Q9H000	416 aa	Known RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	NCOA5	Q9HCD5	579 aa	Known RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	RAPGEFL1	Q9UHV5	662 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	HACL1	Q9UJ83	578 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	ZNF214	Q9UL59	606 aa	Predicted RBP	4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	RNF123	Q5XPI4	1314 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	ZNF541	Q9H0D2	1346 aa		4.86	□□□□□ -1.63
LIMA1-208	ENST00000551691	TRIOBP	Q9H2D6	2365 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	CCDC194	A0A1B0GVG4	234 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	TPD52L2	O43399	206 aa	Known RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	PLIN1	O60240	522 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	PEX14	O75381	377 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	RPS6KA4	O75676	772 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	ESR1	P03372	595 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	ACR	P10323	421 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	PML	P29590	882 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	POLR2B	P30876	1174 aa	Known RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	FLT3	P36888	993 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	CDKN1C	P49918	316 aa	Predicted RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	NEK4	P51957	841 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	SUMO1	P63165	101 aa	Known RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	FNDC3B	Q53EP0	1204 aa	Known RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	TMEM201	Q5SNT2	666 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	LILRA6	Q6PI73	481 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	ATG14	Q6ZNE5	492 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	DDX46	Q7L014	1031 aa	Known RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	DDX42	Q86XP3	938 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	THNSL2	Q86YJ6	484 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	JAML	Q86YT9	394 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	CREG2	Q8IUH2	290 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	MFSD2A	Q8NA29	543 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	CCDC74B	Q96LY2	380 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	ADAMTS10	Q9H324	1103 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	EPB41L4B	Q9H329	900 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	GABBR1	Q9UBS5	961 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	MAPRE3	Q9UPY8	281 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	MRPS23	Q9Y3D9	190 aa	Known RBP	4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	LTBP3	Q9NS15	1303 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	TIAM2	Q8IVF5	1701 aa		4.85	□□□□□ -1.63
LIMA1-208	ENST00000551691	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	RGPD2	P0DJD1	1756 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	CHURC1-FNTB	B4DL54	471 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	ETV2	O00321	342 aa	Predicted RBP	4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	CA12	O43570	354 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	ADCY3	O60266	1144 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	RFPL3	O75679	317 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	PPM1B	O75688	479 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	CST3	P01034	146 aa	Predicted RBP	4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	TMEM253	P0C7T8	217 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	GUCY2F	P51841	1108 aa		4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	PMS1	P54277	932 aa	Known RBP	4.84	□□□□□ -1.63
LIMA1-208	ENST00000551691	CBX2	Q14781	532 aa	Predicted RBP	4.84	□□□□□ -1.63

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