RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 PDIK1LQ8N165 341 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 CAPN11Q9UMQ6 739 aa13.8□□□□□ -0.2
PTCH1-212ENST00000546744 USP15Q9Y4E8 981 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-212ENST00000546744 PCDH11XQ9BZA7 1347 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 PCDH11YQ9BZA8 1340 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 TNS3Q68CZ2 1445 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 HSPA9P38646 679 aaKnown RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 RINT1Q6NUQ1 792 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 RSBN1LQ6PCB5 846 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 THOC1Q96FV9 657 aaKnown RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 TMEM51Q9NW97 253 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 PCDHA4Q9UN74 947 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 ORC6Q9Y5N6 252 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 PVALEFA0A1B0GWK0 134 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 KLHL38Q2WGJ6 581 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 NAA35Q5VZE5 725 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 KDM7AQ6ZMT4 941 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 PCGF5Q86SE9 256 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 SLC40A1Q9NP59 571 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 IL1RAPL1Q9NZN1 696 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 ANKRD26Q9UPS8 1709 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 SSU72P8A0A1W2PR75 194 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 GFPT2O94808 682 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 ESRRBO95718 433 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 SPATA21Q7Z572 469 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 SESTD1Q86VW0 696 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 FAM178BQ8IXR5 827 aa13.79□□□□□ -0.2
PTCH1-212ENST00000546744 PPWD1Q96BP3 646 aaKnown RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 CHCHD3Q9NX63 227 aaKnown RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 LIMA1Q9UHB6 759 aaKnown RBP13.79□□□□□ -0.2
PTCH1-212ENST00000546744 CCT8L1PA6NM43 557 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 VPS41P49754 854 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 MESDQ14696 234 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 DAB2IPQ5VWQ8 1189 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ARHGAP27Q6ZUM4 889 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 TUBE1Q9UJT0 475 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 DBNLQ9UJU6 430 aaKnown RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 UBN2Q6ZU65 1347 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 RFX1P22670 979 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 YWHAGP61981 247 aaKnown RBP eCLIP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 NOP14P78316 857 aaKnown RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ALCAMQ13740 583 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 TOB2Q14106 344 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 DNAL1Q4LDG9 190 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ICA1LQ8NDH6 482 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 USP6NLQ92738 828 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 INTUQ9ULD6 942 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 L1RE1Q9UN81 338 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 SMG5Q9UPR3 1016 aaKnown RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 XRN1Q8IZH2 1706 aaKnown RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 HDAC4P56524 1084 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 RASA3Q14644 834 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 RARS2Q5T160 578 aaKnown RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 SYDE1Q6ZW31 735 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 FAM210AQ96ND0 272 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 NT5C1BQ96P26 610 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ROPN1BQ9BZX4 212 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ROPN1Q9HAT0 212 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 SH3GLB2Q9NR46 395 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 KAT6BQ8WYB5 2073 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 SRRM3A6NNA2 597 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ZBTB22O15209 634 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 DIAPH2O60879 1101 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 CYB5D1Q6P9G0 228 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 TRPM8Q7Z2W7 1104 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 SLC52A2Q9HAB3 445 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 ZC4H2Q9NQZ6 224 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 DISC1Q9NRI5 854 aa13.78□□□□□ -0.2
PTCH1-212ENST00000546744 NIP7Q9Y221 180 aaKnown RBP eCLIP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.78□□□□□ -0.2
PTCH1-212ENST00000546744 FGGP02679 453 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 PDHA1P08559 390 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 MCF2P10911 925 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 MAPK4P31152 587 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 HIBADHP31937 336 aaKnown RBP13.77□□□□□ -0.2
PTCH1-212ENST00000546744 TECP42680 631 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 MYL7Q01449 175 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 STAT4Q14765 748 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 SWT1Q5T5J6 900 aaKnown RBP13.77□□□□□ -0.2
PTCH1-212ENST00000546744 EPM2AIP1Q7L775 607 aaPredicted RBP13.77□□□□□ -0.2
PTCH1-212ENST00000546744 MON2Q7Z3U7 1717 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 PNMA1Q8ND90 353 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 DNAJC9Q8WXX5 260 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 SEC16BQ96JE7 1060 aa13.77□□□□□ -0.2
PTCH1-212ENST00000546744 SNUPNO95149 360 aaKnown RBP13.77□□□□□ -0.21
PTCH1-212ENST00000546744 BRAFP15056 766 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 MRPS25P82663 173 aaKnown RBP13.77□□□□□ -0.21
PTCH1-212ENST00000546744 TFAP4Q01664 338 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 MED21Q13503 144 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 PTGISQ16647 500 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 TPTE2Q6XPS3 522 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 CYFIP2Q96F07 1278 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 SETDB2Q96T68 719 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 FAM167BQ9BTA0 163 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 RASA4BC9J798 803 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 RASA4O43374 803 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 PDE1BQ01064 536 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 ADRM1Q16186 407 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 TRMT10CQ7L0Y3 403 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms