RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 PNMA6FA0A0J9YX94 578 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 TMEM221A6NGB7 291 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 M0R296 226 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 GLP2RO95838 553 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 PTPN5P54829 565 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 ZXDAP98168 799 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 MARCH8Q5T0T0 291 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 EFHBQ8N7U6 833 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 IL25Q9H293 177 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 AGO3Q9H9G7 860 aaKnown RBP14.82□□□□□ -0.04
USP28-212ENST00000544750 MYO15AQ9UKN7 3530 aa14.82□□□□□ -0.04
USP28-212ENST00000544750 GSTTP1A0A1W2PQM5 241 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 NDUFV1P49821 464 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 TROAPQ12815 778 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 PKN1Q16512 942 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 PCNX4Q63HM2 1172 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 TSHZ1Q6ZSZ6 1077 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 SMC5Q8IY18 1101 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 CMTR2Q8IYT2 770 aaKnown RBP14.81□□□□□ -0.04
USP28-212ENST00000544750 PBXIP1Q96AQ6 731 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 SENP2Q9HC62 589 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 CDY2AQ9Y6F7 541 aa14.81□□□□□ -0.04
USP28-212ENST00000544750 MEIS2O14770 477 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 ATP9AO75110 1047 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 CSPG5O95196 566 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 IGHDP01880 384 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 KCNA2P16389 499 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 TCF7P36402 384 aaPredicted RBP14.8□□□□□ -0.04
USP28-212ENST00000544750 IRX6P78412 446 aaPredicted RBP14.8□□□□□ -0.04
USP28-212ENST00000544750 PPFIA1Q13136 1202 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 GRIK4Q16099 956 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 XRRA1Q6P2D8 792 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 KLHL23Q8NBE8 558 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 DNAJB3Q8WWF6 145 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 PRRX2Q99811 253 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 DIAPH3Q9NSV4 1193 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 TUBE1Q9UJT0 475 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 SQORQ9Y6N5 450 aa14.8□□□□□ -0.04
USP28-212ENST00000544750 PIK3CDO00329 1044 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 ST18O60284 1047 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 DMDP11532 3685 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 CD52P31358 61 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 SP4Q02446 784 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 USP17L6PQ6QN14 398 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 RSPH3Q86UC2 560 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 FBXL6Q8N531 539 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 POF1BQ8WVV4 589 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 PPP2R3CQ969Q6 453 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 SPTBN4Q9H254 2564 aa14.79□□□□□ -0.04
USP28-212ENST00000544750 USP15Q9Y4E8 981 aaPredicted RBP14.79□□□□□ -0.04
USP28-212ENST00000544750 ZFHX2Q9C0A1 2572 aaPredicted RBP14.78□□□□□ -0.04
USP28-212ENST00000544750 HIP1O00291 1037 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 NRIP1P48552 1158 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 MRPS6P82932 125 aaKnown RBP14.78□□□□□ -0.04
USP28-212ENST00000544750 NPAS4Q8IUM7 802 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 GIMAP8Q8ND71 665 aaPredicted RBP14.78□□□□□ -0.04
USP28-212ENST00000544750 ATP8B4Q8TF62 1192 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 SEPT1Q8WYJ6 367 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 SUSD6Q92537 303 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 GPRASP2Q96D09 838 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 ASIC4Q96FT7 647 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 PHF7Q9BWX1 381 aaPredicted RBP14.78□□□□□ -0.04
USP28-212ENST00000544750 FTHL17Q9BXU8 183 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 ERAP1Q9NZ08 941 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 BARX2Q9UMQ3 279 aaPredicted RBP14.78□□□□□ -0.04
USP28-212ENST00000544750 PCDHGC5Q9Y5F6 944 aa14.78□□□□□ -0.04
USP28-212ENST00000544750 WDR81Q562E7 1941 aa14.77□□□□□ -0.04
USP28-212ENST00000544750 ATF7P17544 494 aaPredicted RBP14.77□□□□□ -0.05
USP28-212ENST00000544750 SIGLEC14Q08ET2 396 aa14.77□□□□□ -0.05
USP28-212ENST00000544750 NLRX1Q86UT6 975 aa14.77□□□□□ -0.05
USP28-212ENST00000544750 SUGP1Q8IWZ8 645 aaKnown RBP14.77□□□□□ -0.05
USP28-212ENST00000544750 VN1R2Q8NFZ6 395 aa14.77□□□□□ -0.05
USP28-212ENST00000544750 ZBTB10Q96DT7 871 aa14.77□□□□□ -0.05
USP28-212ENST00000544750 PCYT2Q99447 389 aa14.77□□□□□ -0.05
USP28-212ENST00000544750 PADI3Q9ULW8 664 aa14.77□□□□□ -0.05
USP28-212ENST00000544750 PTPRZ1P23471 2315 aaPredicted RBP14.76□□□□□ -0.05
USP28-212ENST00000544750 IGSF9BQ9UPX0 1349 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 RPLP2P05387 115 aaKnown RBP14.76□□□□□ -0.05
USP28-212ENST00000544750 ITGB5P18084 799 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 MARK3P27448 753 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 GATMP50440 423 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 VCPP55072 806 aaKnown RBP14.76□□□□□ -0.05
USP28-212ENST00000544750 KCNC3Q14003 757 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 RBM23Q86U06 439 aaKnown RBP14.76□□□□□ -0.05
USP28-212ENST00000544750 CHD1LQ86WJ1 897 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 SMARCC2Q8TAQ2 1214 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 SPZ1Q9BXG8 430 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 TMX1Q9H3N1 280 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 RWDD1Q9H446 243 aaPredicted RBP14.76□□□□□ -0.05
USP28-212ENST00000544750 SMARCAD1Q9H4L7 1026 aa14.76□□□□□ -0.05
USP28-212ENST00000544750 KDM3AQ9Y4C1 1321 aa14.75□□□□□ -0.05
USP28-212ENST00000544750 MYH9P35579 1960 aaKnown RBP14.75□□□□□ -0.05
USP28-212ENST00000544750 RRN3P2A6NIE6 340 aa14.75□□□□□ -0.05
USP28-212ENST00000544750 IFIT3O14879 490 aaKnown RBP14.75□□□□□ -0.05
USP28-212ENST00000544750 CYP21A2P08686 494 aa14.75□□□□□ -0.05
USP28-212ENST00000544750 STAG3L1P0CL83 205 aa14.75□□□□□ -0.05
USP28-212ENST00000544750 SCG2P13521 617 aa14.75□□□□□ -0.05
USP28-212ENST00000544750 INSRRP14616 1297 aa14.75□□□□□ -0.05
USP28-212ENST00000544750 RBM10P98175 930 aaKnown RBP14.75□□□□□ -0.05
USP28-212ENST00000544750 NUCB1Q02818 461 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms