RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 RAD51CO43502 376 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 KIF4AO95239 1232 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 FAM153BP0C7A2 387 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 ATP2B4P23634 1241 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 GTF2A1P52655 376 aaPredicted RBP15.05■□□□□ -0
VPS33A-208ENST00000543633 ZNF543Q08ER8 600 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 MTMR3Q13615 1198 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 PTGISQ16647 500 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 FAM153CQ494X1 144 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 GPATCH4Q5T3I0 446 aaKnown RBP15.05■□□□□ -0
VPS33A-208ENST00000543633 SCFD2Q8WU76 684 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 EHD4Q9H223 541 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 FAM153AQ9UHL3 310 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 PCDHA12Q9UN75 941 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 TRAF3IP3Q9Y228 551 aa15.05■□□□□ -0
VPS33A-208ENST00000543633 MEFVO15553 781 aaPredicted RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 GFPT2O94808 682 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 KRT14P02533 472 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 MDH1P40925 334 aaKnown RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 GABPAQ06546 454 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 DRP2Q13474 957 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 BIRC3Q13489 604 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 PLCB4Q15147 1175 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 ECM1Q16610 540 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 MCTP2Q6DN12 878 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 TMC4Q7Z404 712 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 SCFD1Q8WVM8 642 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 IFT81Q8WYA0 676 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 AKT1S1Q96B36 256 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 RNPC3Q96LT9 517 aaKnown RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 MBOAT7Q96N66 472 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 TMBIM4Q9HC24 238 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 CD209Q9NNX6 404 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 EMILIN3Q9NT22 766 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 NENFQ9UMX5 172 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 LRRC37AA6NMS7 1700 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 ANKRD65E5RJM6 399 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 PLA2G4BP0C869 781 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 GYS1P13807 737 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 CYP11B2P19099 503 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 HMGB2P26583 209 aaKnown RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 LIG3P49916 1009 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 NPEPPSP55786 919 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 MRPS25P82663 173 aaKnown RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 ITGB3BPQ13352 177 aaPredicted RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 SPDYCQ5MJ68 293 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 FAM133AQ8N9E0 248 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 LRRC57Q8N9N7 239 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 PRPF38AQ8NAV1 312 aaKnown RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 LMBR1Q8WVP7 490 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 HINFPQ9BQA5 517 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 SLITRK6Q9H5Y7 841 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 JMJD4Q9H9V9 463 aa15.04■□□□□ -0
VPS33A-208ENST00000543633 ATF5Q9Y2D1 282 aaPredicted RBP15.04■□□□□ -0
VPS33A-208ENST00000543633 FRMPD2Q68DX3 1309 aaPredicted RBP15.03■□□□□ -0
VPS33A-208ENST00000543633 CYP3A7-CYP3A51PA0A087WV96 503 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 PGRMC1O00264 195 aaKnown RBP15.03■□□□□ -0
VPS33A-208ENST00000543633 FLOT1O75955 427 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 TTLL1O95922 423 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 CYP3A7P24462 503 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 KCNH2Q12809 1159 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 NFIXQ14938 502 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 NAA35Q5VZE5 725 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 RUFY4Q6ZNE9 571 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 GPBP1Q86WP2 473 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 SLFN12Q8IYM2 578 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 SH2D3CQ8N5H7 860 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.03■□□□□ -0
VPS33A-208ENST00000543633 KCNMB3Q9NPA1 279 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 ADAMTS1Q9UHI8 967 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 PLAAQ9Y263 795 aa15.03■□□□□ -0
VPS33A-208ENST00000543633 MARCH6O60337 910 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 FAM107AO95990 144 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 AFPP02771 609 aaKnown RBP15.02■□□□□ -0
VPS33A-208ENST00000543633 ZBTB48P10074 688 aaPredicted RBP15.02■□□□□ -0
VPS33A-208ENST00000543633 ADAM9Q13443 819 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 HERC4Q5GLZ8 1057 aaPredicted RBP15.02■□□□□ -0
VPS33A-208ENST00000543633 AGBL2Q5U5Z8 902 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 DPY19L2P1Q6NXN4 242 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 IRF2BP2Q7Z5L9 587 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 VPS36Q86VN1 386 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 SYCE1Q8N0S2 351 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 RASGEF1CQ8N431 466 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 OTUD6BQ8N6M0 293 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 METTL14Q9HCE5 456 aaKnown RBP15.02■□□□□ -0
VPS33A-208ENST00000543633 HDAC9Q9UKV0 1011 aa15.02■□□□□ -0
VPS33A-208ENST00000543633 LTBP1Q14766 1721 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 ESYT3A0FGR9 886 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 GTPBP10A4D1E9 387 aaKnown RBP15.02□□□□□ -0.01
VPS33A-208ENST00000543633 ZSCAN5CA6NGD5 496 aaPredicted RBP15.02□□□□□ -0.01
VPS33A-208ENST00000543633 ZBTB5O15062 677 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 SLC16A3O15427 465 aaKnown RBP15.02□□□□□ -0.01
VPS33A-208ENST00000543633 SLFN11Q7Z7L1 901 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 ADGRF4Q8IZF3 695 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 KCTD17Q8N5Z5 321 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 ZNF473Q8WTR7 871 aaKnown RBP15.02□□□□□ -0.01
VPS33A-208ENST00000543633 KAT2BQ92831 832 aa15.02□□□□□ -0.01
VPS33A-208ENST00000543633 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.02□□□□□ -0.01
VPS33A-208ENST00000543633 SUCLA2Q9P2R7 463 aaPredicted RBP15.02□□□□□ -0.01
VPS33A-208ENST00000543633 SUGT1Q9Y2Z0 365 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms