RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RUBCNQ92622 972 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 TATDN2Q93075 761 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 TRAIPQ9BWF2 469 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 PUS7LQ9H0K6 701 aaKnown RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 ZNF287Q9HBT7 754 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 SH2B1Q9NRF2 756 aaPredicted RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 DLL3Q9NYJ7 618 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 FBXL21Q9UKT6 434 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 LHX6Q9UPM6 363 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 MRPL42Q9Y6G3 142 aaKnown RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 KIAA1217Q5T5P2 1943 aa5.62□□□□□ -1.51
LIMS1-214ENST00000542845 RIF1Q5UIP0 2472 aaKnown RBP5.62□□□□□ -1.51
LIMS1-214ENST00000542845 KMT2BQ9UMN6 2715 aaPredicted RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 GSG1L2A8MUP6 293 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 C2CD4DB7Z1M9 353 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 IPO8O15397 1037 aaKnown RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 WEE2P0C1S8 567 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 LINC00271P0C7V0 271 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SRGAP2BP0DMP2 458 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 GHRP10912 638 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 MYH7P12883 1935 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 AOC1P19801 751 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 ATXN1P54253 815 aaKnown RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 ERVFC1P60507 584 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 STXBP2Q15833 593 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SBK1Q52WX2 424 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SPECC1Q5M775 1068 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 KIAA0319Q5VV43 1072 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 FRMPD2Q68DX3 1309 aaPredicted RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 CCDC62Q6P9F0 684 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SERINC5Q86VE9 423 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 CCDC105Q8IYK2 499 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 DNERQ8NFT8 737 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 VN1R2Q8NFZ6 395 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SUSD6Q92537 303 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 TBC1D5Q92609 795 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 APBB2Q92870 758 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 CLP1Q92989 425 aaKnown RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 P2RX5Q93086 422 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 GMCL1Q96IK5 515 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SPATA33Q96N06 139 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 TAAR1Q96RJ0 339 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 PLVAPQ9BX97 442 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 S1PR5Q9H228 398 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 RNPEPQ9H4A4 650 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SETD4Q9NVD3 440 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 TMEM260Q9NX78 707 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 NOP58Q9Y2X3 529 aaKnown RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 SUPT16HQ9Y5B9 1047 aaKnown RBP5.61□□□□□ -1.51
LIMS1-214ENST00000542845 MRVI1Q9Y6F6 885 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 ZFHX4Q86UP3 3567 aa5.61□□□□□ -1.51
LIMS1-214ENST00000542845 DNAH14Q0VDD8 3507 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ZBED9Q6R2W3 1325 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 LOC102724159A0A0B4J2E5 919 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 TRIM6-TRIM34B2RNG4 842 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 HAS3O00219 553 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 NMT2O60551 498 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 RNF40O75150 1001 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 DGKIO75912 1065 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 SMIM10L2AP0DMW4 78 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 SMIM10L2BP0DMW5 78 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 MYCLP12524 364 aaPredicted RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 TRIM27P14373 513 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 GATMP50440 423 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 APOBRQ0VD83 1088 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 LAMC2Q13753 1193 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ACAP1Q15027 740 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 PWP2Q15269 919 aaKnown RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 TMCO4Q5TGY1 634 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 SYDE2Q5VT97 1194 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 PLPP4Q5VZY2 271 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 CWF19L1Q69YN2 538 aaKnown RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ZSCAN25Q6NSZ9 544 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 CES5AQ6NT32 575 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ANKRD54Q6NXT1 300 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ERC1Q8IUD2 1116 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 SIX5Q8N196 739 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 CLASRPQ8N2M8 674 aaKnown RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 TMEM57Q8N5G2 664 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 NEDD1Q8NHV4 660 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 RHPN1Q8TCX5 695 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 CLEC4DQ8WXI8 215 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ARHGAP45Q92619 1136 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 ZNF689Q96CS4 500 aaPredicted RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 STRBPQ96SI9 672 aaKnown RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 KCNK17Q96T54 332 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 RTP3Q9BQQ7 232 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 RANBP17Q9H2T7 1088 aaKnown RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 SEMA4AQ9H3S1 761 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 POMKQ9H5K3 350 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 TMEM134Q9H6X4 195 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 NCDNQ9UBB6 729 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 DDX41Q9UJV9 622 aaKnown RBP5.6□□□□□ -1.51
LIMS1-214ENST00000542845 LRFN2Q9ULH4 789 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 PCDHB15Q9Y5E8 787 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 BAHCC1Q9P281 2608 aa5.6□□□□□ -1.51
LIMS1-214ENST00000542845 KAT6AQ92794 2004 aa5.59□□□□□ -1.51
LIMS1-214ENST00000542845 TSPY2A6NKD2 308 aa5.59□□□□□ -1.51
LIMS1-214ENST00000542845 H3BRB1 525 aa5.59□□□□□ -1.51
LIMS1-214ENST00000542845 ANP32CO43423 234 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms