RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 B3GNT9Q6UX72 402 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 MCF2L2Q86YR7 1114 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 EIF2AK1Q9BQI3 630 aaKnown RBP10.88□□□□□ -0.67
SS18-205ENST00000542420 ZNF446Q9NWS9 450 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 AIPL1Q9NZN9 384 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 JRKLQ9Y4A0 524 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.88□□□□□ -0.67
SS18-205ENST00000542420 FHOD1Q9Y613 1164 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 SAR1BQ9Y6B6 198 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 BZW2Q9Y6E2 419 aaKnown RBP10.88□□□□□ -0.67
SS18-205ENST00000542420 BTNL10A8MVZ5 291 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 WDR46O15213 610 aaKnown RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 PNMA6AP0CW24 399 aaPredicted RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 MAPTP10636 758 aaKnown RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 ALCAMQ13740 583 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 TNFAIP1Q13829 316 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 EPHA7Q15375 998 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 EZH2Q15910 746 aaKnown RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 SLC9C1Q4G0N8 1177 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 OTOP1Q7RTM1 612 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 GOLGA5Q8TBA6 731 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 HPS3Q969F9 1004 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 TIPINQ9BVW5 301 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 IRX2Q9BZI1 471 aaPredicted RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 UBXN6Q9BZV1 441 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 RNF14Q9UBS8 474 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 LOC285556D6RIA3 1793 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 POTEFA5A3E0 1075 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 MEIS1O00470 390 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 TBCAO75347 108 aaKnown RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 GFPT2O94808 682 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 ICAM1P05362 532 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 POTEIP0CG38 1075 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 PTGER2P43116 358 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 KIF11P52732 1056 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 ZNF131P52739 623 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 KCNMA1Q12791 1236 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 ADAM9Q13443 819 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 SHROOM1Q2M3G4 852 aaPredicted RBP10.87□□□□□ -0.67
SS18-205ENST00000542420 USH1GQ495M9 461 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 POTEGQ6S5H5 508 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 POTEEQ6S8J3 1075 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 CACNA2D4Q7Z3S7 1137 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 ALS2CR12Q96Q35 445 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 NACC1Q96RE7 527 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 PARD6BQ9BYG5 372 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 MMRN2Q9H8L6 949 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 ARHGAP20Q9P2F6 1191 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 GUCA1BQ9UMX6 200 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 WDR81Q562E7 1941 aa10.87□□□□□ -0.67
SS18-205ENST00000542420 MYH10P35580 1976 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 TCP10L2B9ZVM9 353 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 RAD21O60216 631 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 SSBP05455 408 aaKnown RBP eCLIP10.86□□□□□ -0.67
SS18-205ENST00000542420 KCNA3P22001 575 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 GUCY2CP25092 1073 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 ZNF280AP59817 542 aaPredicted RBP10.86□□□□□ -0.67
SS18-205ENST00000542420 SNRPFP62306 86 aaKnown RBP10.86□□□□□ -0.67
SS18-205ENST00000542420 CEP55Q53EZ4 464 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 FAM83BQ5T0W9 1011 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 SFMBT2Q5VUG0 894 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 VTI1AQ96AJ9 217 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 REEP2Q9BRK0 252 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 PCDHA13Q9Y5I0 950 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 LTBP3Q9NS15 1303 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 LRRC53A6NM62 1247 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 BAG6P46379 1132 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 KLK7P49862 253 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 TNIP1Q15025 636 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 LRRC41Q15345 812 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 LRCH2Q5VUJ6 765 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 TEKT3Q9BXF9 490 aa10.86□□□□□ -0.67
SS18-205ENST00000542420 IFIH1Q9BYX4 1025 aaKnown RBP10.86□□□□□ -0.67
SS18-205ENST00000542420 LYPLA2O95372 231 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 AFPP02771 609 aaKnown RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 TCP1P17987 556 aaKnown RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 STAT3P40763 770 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 HGSNATQ68CP4 663 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 RINT1Q6NUQ1 792 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 XRRA1Q6P2D8 792 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 C1orf186Q6ZWK4 172 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 SLC17A8Q8NDX2 589 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 HOOK2Q96ED9 719 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 TANGO6Q9C0B7 1094 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 KIAA1683Q9H0B3 1180 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 GANQ9H2C0 597 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 DEF6Q9H4E7 631 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 ANKZF1Q9H8Y5 726 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 RNF216Q9NWF9 866 aaPredicted RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 ARMCX3Q9UH62 379 aaPredicted RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 A0A0U1RQJ8 604 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 MAP2K7O14733 419 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 AKR1B10O60218 316 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 PPP1R12BO60237 982 aaPredicted RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 NOL4O94818 638 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 CLSTN1O94985 981 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 SLURP2P0DP57 97 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 EPB41P11171 864 aaKnown RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 NR2F2P24468 414 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 EIF4A3P38919 411 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms