RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 MAF1Q9H063 256 aa9.98□□□□□ -0.81
CLSTN3-212ENST00000541770 NAP1L2Q9ULW6 460 aaPredicted RBP9.98□□□□□ -0.81
CLSTN3-212ENST00000541770 KIAA1671Q9BY89 1806 aa9.98□□□□□ -0.81
CLSTN3-212ENST00000541770 PNMA6FA0A0J9YX94 578 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 H3BRB1 525 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 NOP56O00567 594 aaKnown RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 GRM6O15303 877 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 NCK2O43639 380 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 PFKFB2O60825 505 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 SMIM10L2AP0DMW4 78 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 SMIM10L2BP0DMW5 78 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 GTF2F1P35269 517 aaKnown RBP eCLIP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 ADD1P35611 737 aaKnown RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 LTBRP36941 435 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 NDUFV1P49821 464 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 HYAL1Q12794 435 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 MKRN4PQ13434 485 aaPredicted RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 SMAD2Q15796 467 aaKnown RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 CELF3Q5SZQ8 465 aaKnown RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 MYSM1Q5VVJ2 828 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 PBXIP1Q96AQ6 731 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 RRP36Q96EU6 259 aaKnown RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 PIGSQ96S52 555 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 AMNQ9BXJ7 453 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 TUT1Q9H6E5 874 aaKnown RBP9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 TPCN1Q9ULQ1 816 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 CNTNAP5Q8WYK1 1306 aa9.97□□□□□ -0.81
CLSTN3-212ENST00000541770 LINC01565O15544 149 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 ST18O60284 1047 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 IFNAR1P17181 557 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 UBA1P22314 1058 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 HOXA13P31271 388 aaPredicted RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 PTPN5P54829 565 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 CCT2P78371 535 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 SP2Q02086 613 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 SMAD4Q13485 552 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 NTRK3Q16288 839 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 ME3Q16798 604 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 HERC4Q5GLZ8 1057 aaPredicted RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 IER5LQ5T953 404 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 KCNV1Q6PIU1 500 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 HOMER1Q86YM7 354 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 SUGP1Q8IWZ8 645 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 CMTR1Q8N1G2 835 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 PRSS33Q8NF86 280 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 APBB2Q92870 758 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 GPKOWQ92917 476 aaPredicted RBP eCLIP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 ZSCAN31Q96LW9 406 aaPredicted RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 PDCD2LQ9BRP1 358 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 LARP6Q9BRS8 491 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 C16orf70Q9BSU1 422 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 C11orf84Q9BUA3 381 aaPredicted RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 LMAN2LQ9H0V9 348 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 SLKQ9H2G2 1235 aaPredicted RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 RNPEPQ9H4A4 650 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 SEC63Q9UGP8 760 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 CD207Q9UJ71 328 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 LIMCH1Q9UPQ0 1083 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 COL4A6Q14031 1691 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 KMT2EQ8IZD2 1858 aa9.96□□□□□ -0.82
CLSTN3-212ENST00000541770 TMEM221A6NGB7 291 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 hCG_1984214I3L0E3 225 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 M0R296 226 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 PRPF3O43395 683 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 PPP1R11O60927 126 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 TBX10O75333 385 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 LGALS2P05162 132 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 RB1P06400 928 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 GNAT1P11488 350 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 CCND2P30279 289 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 BMPR1AP36894 532 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 MCM2P49736 904 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 ARHGAP4P98171 946 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 SP4Q02446 784 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 SCRN1Q12765 414 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 BTG3Q14201 252 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 PGM5Q15124 567 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 UTP14CQ5TAP6 766 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 CPLX2Q6PUV4 134 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 FCHSD1Q86WN1 690 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 CCDC82Q8N4S0 544 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 SAMD3Q8N6K7 520 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 ZNF713Q8N859 430 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 EDAQ92838 391 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 RNF26Q9BY78 433 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 NCOA5Q9HCD5 579 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 ALG13Q9NP73 1137 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 SH2B1Q9NRF2 756 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 SETD4Q9NVD3 440 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 FAM86C1Q9NVL1 165 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 RWDD3Q9Y3V2 267 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 ADGRA3Q8IWK6 1321 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 LOXHD1Q8IVV2 1947 aa9.95□□□□□ -0.82
CLSTN3-212ENST00000541770 PLXNA4Q9HCM2 1894 aa9.94□□□□□ -0.82
CLSTN3-212ENST00000541770 CPLX1O14810 134 aa9.94□□□□□ -0.82
CLSTN3-212ENST00000541770 CDKL5O76039 1030 aa9.94□□□□□ -0.82
CLSTN3-212ENST00000541770 RGS20O76081 388 aa9.94□□□□□ -0.82
CLSTN3-212ENST00000541770 GHRP10912 638 aa9.94□□□□□ -0.82
CLSTN3-212ENST00000541770 HOXD8P13378 290 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms