RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 C1orf186Q6ZWK4 172 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 NIPA1Q7RTP0 329 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 WDR11Q9BZH6 1224 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 FAM207AQ9NSI2 230 aaPredicted RBP15.21■□□□□ 0.03
RTN3-210ENST00000540798 TRIM10Q9UDY6 481 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 ZNF263O14978 683 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 ZBTB7AO95365 584 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 ARP10275 920 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 CCDC40Q4G0X9 1142 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 PDXDC1Q6P996 788 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 SRGAP1Q7Z6B7 1085 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 DYDC2Q96IM9 177 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 MXRA8Q9BRK3 442 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 MTFR1LQ9H019 292 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 ZNF446Q9NWS9 450 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 RCCD1A6NED2 376 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 RSPH10B2B2RC85 870 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 RSPH10BP0C881 870 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 ADAM9Q13443 819 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 SAMD3Q8N6K7 520 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 SYN2Q92777 582 aaPredicted RBP15.21■□□□□ 0.02
RTN3-210ENST00000540798 ZBTB9Q96C00 473 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 RIT2Q99578 217 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 UNC45AQ9H3U1 944 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 MMRN2Q9H8L6 949 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 SLC38A10Q9HBR0 1119 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 MAP3K20Q9NYL2 800 aaKnown RBP15.21■□□□□ 0.02
RTN3-210ENST00000540798 COL20A1Q9P218 1284 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 CCPG1Q9ULG6 757 aa15.21■□□□□ 0.02
RTN3-210ENST00000540798 MYBP10242 640 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 CTTNQ14247 550 aaKnown RBP15.2■□□□□ 0.02
RTN3-210ENST00000540798 EPHA7Q15375 998 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 ASTE1Q2TB18 679 aaPredicted RBP15.2■□□□□ 0.02
RTN3-210ENST00000540798 FRMD5Q7Z6J6 570 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 CCDC155Q8N6L0 562 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 GPR161Q8N6U8 529 aaKnown RBP15.2■□□□□ 0.02
RTN3-210ENST00000540798 RABGGTAQ92696 567 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 ZNF577Q9BSK1 485 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 CEP72Q9P209 647 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 LRRC53A6NM62 1247 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 FZD9O00144 591 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 GAS7O60861 476 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 ZNF131P52739 623 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 UBXN2AP68543 259 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 NFIL3Q16649 462 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 DPY19L2P1Q6NXN4 242 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 KRT26Q7Z3Y9 468 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 CEP112Q8N8E3 955 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 NEK11Q8NG66 645 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 KCND2Q9NZV8 630 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 WRAP73Q9P2S5 460 aaPredicted RBP15.2■□□□□ 0.02
RTN3-210ENST00000540798 ASTN1O14525 1302 aa15.2■□□□□ 0.02
RTN3-210ENST00000540798 CETN3O15182 167 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 EIF3DO15371 548 aaKnown RBP eCLIP15.19■□□□□ 0.02
RTN3-210ENST00000540798 ITGB5P18084 799 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 VAV2P52735 878 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 SLC30A10Q6XR72 485 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 JAKMIP2Q96AA8 810 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 TYW1Q9NV66 732 aaKnown RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 OGFRQ9NZT2 677 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 PLEKP08567 350 aaPredicted RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 NR2F2P24468 414 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 POLD1P28340 1107 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 MYH11P35749 1972 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 CLCN6P51797 869 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 WHAMMP3Q1A5X7 153 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 CCDC122Q5T0U0 273 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 HGSNATQ68CP4 663 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 MCF2L2Q86YR7 1114 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 EHBP1Q8NDI1 1231 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 SMCR8Q8TEV9 937 aaPredicted RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 GOLGA1Q92805 767 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 HOOK2Q96ED9 719 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 FIZ1Q96SL8 496 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 TEKT3Q9BXF9 490 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 LACRTQ9GZZ8 138 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 ZMYM2Q9UBW7 1377 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 GUCA1BQ9UMX6 200 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 SCAF8Q9UPN6 1271 aaKnown RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.19■□□□□ 0.02
RTN3-210ENST00000540798 SPDYE4A6NLX3 237 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 NFIBO00712 420 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 SLC16A3O15427 465 aaKnown RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 KRT86O43790 486 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 CALUO43852 315 aaPredicted RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 GMPSP49915 693 aaPredicted RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 TRAPPC11Q7Z392 1133 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 NEK9Q8TD19 979 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 SGIP1Q9BQI5 828 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 NUCKS1Q9H1E3 243 aaKnown RBP15.19■□□□□ 0.02
RTN3-210ENST00000540798 ZHX3Q9H4I2 956 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 BCAS3Q9H6U6 928 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 ZNF112Q9UJU3 913 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 UBIAD1Q9Y5Z9 338 aa15.19■□□□□ 0.02
RTN3-210ENST00000540798 LOC285556D6RIA3 1793 aa15.18■□□□□ 0.02
RTN3-210ENST00000540798 ASTN2O75129 1339 aaPredicted RBP15.18■□□□□ 0.02
RTN3-210ENST00000540798 SSU72P8A0A1W2PR75 194 aa15.18■□□□□ 0.02
RTN3-210ENST00000540798 IPO5O00410 1097 aaKnown RBP15.18■□□□□ 0.02
RTN3-210ENST00000540798 TBCAO75347 108 aaKnown RBP15.18■□□□□ 0.02
RTN3-210ENST00000540798 PAPD7Q5XG87 772 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms