RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C3P01024 1663 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 MYH10P35580 1976 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 A0A0J9YVX5 310 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 NCK2O43639 380 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 HNRNPCL1O60812 293 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 SHBGP04278 402 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 CPA3P15088 417 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 MAGEA1P43355 309 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 METAP2P50579 478 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP3-203ENST00000538686 CDK7P50613 346 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 GPSM2P81274 684 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 CTDSPL2Q05D32 466 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 INF2Q27J81 1249 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 RALYLQ86SE5 291 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 ZC3H18Q86VM9 953 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 MB21D2Q8IYB1 491 aaPredicted RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 FITM2Q8N6M3 262 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 UTP4Q969X6 686 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 EDC3Q96F86 508 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 CSRNP2Q9H175 543 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 AGPAT5Q9NUQ2 364 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 PRKAG3Q9UGI9 489 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 PNPLA7Q6ZV29 1317 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 DIP2AQ14689 1571 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 SMIM31A0A1B0GVY4 71 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 GOLGA8AA7E2F4 631 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 UTYO14607 1347 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 RGL2O15211 777 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 RGS16O15492 202 aaPredicted RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 AKR1B10O60218 316 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 EYA4O95677 639 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 AFPP02771 609 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 PABPC4LP0CB38 370 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 RASSF7Q02833 373 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 ITGA9Q13797 1035 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 SPDYAQ5MJ70 313 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 CCDC174Q6PII3 467 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 BTNL9Q6UXG8 535 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 ARL10Q8N8L6 244 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 FAM13CQ8NE31 585 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 SEC14L1Q92503 715 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 TAF4BQ92750 862 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 DHRS1Q96LJ7 313 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 TUBGCP5Q96RT8 1024 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 SLITRK6Q9H5Y7 841 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 DDX21Q9NR30 783 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP3-203ENST00000538686 DDX43Q9NXZ2 648 aaKnown RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 SUCLA2Q9P2R7 463 aaPredicted RBP13.48□□□□□ -0.25
USP3-203ENST00000538686 ABCF2Q9UG63 623 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 SYNPO2Q9UMS6 1093 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 TBC1D30Q9Y2I9 924 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 CD2APQ9Y5K6 639 aa13.48□□□□□ -0.25
USP3-203ENST00000538686 MYH1P12882 1939 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 TMEM247A6NEH6 219 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 GNAT3A8MTJ3 354 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 GTPBP6O43824 516 aaPredicted RBP13.47□□□□□ -0.25
USP3-203ENST00000538686 HOXD12P35452 270 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 GRIN1Q05586 938 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 DHX9Q08211 1270 aaKnown RBP13.47□□□□□ -0.25
USP3-203ENST00000538686 ADRM1Q16186 407 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 INTS8Q75QN2 995 aaKnown RBP13.47□□□□□ -0.25
USP3-203ENST00000538686 ST13P4Q8IZP2 240 aaPredicted RBP13.47□□□□□ -0.25
USP3-203ENST00000538686 OGFOD1Q8N543 542 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 SAMD3Q8N6K7 520 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 UBAC1Q9BSL1 405 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 POLR3CQ9BUI4 534 aaPredicted RBP13.47□□□□□ -0.25
USP3-203ENST00000538686 TMEM109Q9BVC6 243 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 TIMMDC1Q9NPL8 285 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 PNMA3Q9UL41 463 aa13.47□□□□□ -0.25
USP3-203ENST00000538686 SLIT1O75093 1534 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 PASKQ96RG2 1323 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 SUPT3HO75486 399 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 RGS2P41220 211 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 ACADVLP49748 655 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 TOB1P50616 345 aaPredicted RBP13.46□□□□□ -0.25
USP3-203ENST00000538686 PDE1BQ01064 536 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 TRADDQ15628 312 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 P3H1Q32P28 736 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 MARK2Q7KZI7 788 aaKnown RBP13.46□□□□□ -0.25
USP3-203ENST00000538686 MAP7D3Q8IWC1 876 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP3-203ENST00000538686 NAT14Q8WUY8 206 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 ABHD8Q96I13 439 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 ERGIC2Q96RQ1 377 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 NACA2Q9H009 215 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 EPB41L1Q9H4G0 881 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 NRDE2Q9H7Z3 1164 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 PTTG2Q9NZH5 202 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 ECM29Q5VYK3 1845 aa13.46□□□□□ -0.25
USP3-203ENST00000538686 PCDH11XQ9BZA7 1347 aa13.46□□□□□ -0.26
USP3-203ENST00000538686 MAP3K7O43318 606 aa13.46□□□□□ -0.26
USP3-203ENST00000538686 MMP1P03956 469 aa13.46□□□□□ -0.26
USP3-203ENST00000538686 RASA1P20936 1047 aa13.46□□□□□ -0.26
USP3-203ENST00000538686 PLOD1Q02809 727 aaPredicted RBP13.46□□□□□ -0.26
USP3-203ENST00000538686 AP1B1Q10567 949 aa13.46□□□□□ -0.26
USP3-203ENST00000538686 CYLC2Q14093 348 aaPredicted RBP13.46□□□□□ -0.26
USP3-203ENST00000538686 SPIDRQ14159 915 aa13.46□□□□□ -0.26
USP3-203ENST00000538686 R3HDM1Q15032 1099 aaKnown RBP13.46□□□□□ -0.26
USP3-203ENST00000538686 CNGA2Q16280 664 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms