RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CTAGE6Q86UF2 777 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CTAGE4Q8IX94 777 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SPICE1Q8N0Z3 855 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 PRPF38AQ8NAV1 312 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 ACER1Q8TDN7 264 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SCFD1Q8WVM8 642 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 RUBCNQ92622 972 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SECISBP2LQ93073 1101 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 PURBQ96QR8 312 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 REEP2Q9BRK0 252 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 ZNF577Q9BSK1 485 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 MKNK1Q9BUB5 465 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 TIPINQ9BVW5 301 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 IFIH1Q9BYX4 1025 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 MAF1Q9H063 256 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 KIAA1683Q9H0B3 1180 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 KCTD10Q9H3F6 313 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 ZHX3Q9H4I2 956 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 ARFGAP3Q9NP61 516 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 MYOZ2Q9NPC6 264 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 AGPAT5Q9NUQ2 364 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 ARMCX3Q9UH62 379 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 TSKSQ9UJT2 592 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CCPG1Q9ULG6 757 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 GUCA1BQ9UMX6 200 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 REXO2Q9Y3B8 237 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 CTDP1Q9Y5B0 961 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 BZW2Q9Y6E2 419 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 COL11A1P12107 1806 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 SMCHD1A6NHR9 2005 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 RPTORQ8N122 1335 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 WDR90Q96KV7 1748 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 GTPBP10A4D1E9 387 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 LRRC53A6NM62 1247 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 MEIS1O00470 390 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 PJA2O43164 708 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 CTNND1O60716 968 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 AFPP02771 609 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 MAPTP10636 758 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 XRCC5P13010 732 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 NR2F2P24468 414 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 HOXA13P31271 388 aaPredicted RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 PTGER2P43116 358 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 CLCN6P51797 869 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 SNAP25P60880 206 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 JAG1P78504 1218 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 AMPD2Q01433 879 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 CXCL9Q07325 125 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 GPS2Q13227 327 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 MYBPC2Q14324 1141 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 LRRC41Q15345 812 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 ARSHQ5FYA8 562 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 C10orf76Q5T2E6 689 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 SFMBT2Q5VUG0 894 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 PAPD7Q5XG87 772 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 XRRA1Q6P2D8 792 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 RRAGAQ7L523 313 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 HS2ST1Q7LGA3 356 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 OTOP1Q7RTM1 612 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 TRAPPC11Q7Z392 1133 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 LDHDQ86WU2 507 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 SFR1Q86XK3 245 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 NELFCDQ8IXH7 590 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 RNF10Q8N5U6 811 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 MSANTD4Q8NCY6 345 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 SLC17A8Q8NDX2 589 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 HNRNPLLQ8WVV9 542 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 P2RX7Q99572 595 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 HSD17B14Q9BPX1 270 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 MXRA8Q9BRK3 442 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 WDR18Q9BV38 432 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 LSM14BQ9BX40 385 aaKnown RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 ZNF341Q9BYN7 854 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 TMEM39BQ9GZU3 492 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 BHMT2Q9H2M3 363 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 PARVGQ9HBI0 331 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 AS3MTQ9HBK9 375 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 PLCB1Q9NQ66 1216 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 FAM207AQ9NSI2 230 aaPredicted RBP7.3□□□□□ -1.24
USP28-206ENST00000538224 FBXL5Q9UKA1 691 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 JRKLQ9Y4A0 524 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 SAR1BQ9Y6B6 198 aa7.3□□□□□ -1.24
USP28-206ENST00000538224 SHTN1A0MZ66 631 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 ARHGEF35A5YM69 484 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 RASSF10A6NK89 507 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 RBAK-RBAKDNI3L0D1 243 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 IPO5O00410 1097 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 WNT10BO00744 389 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 DKC1O60832 514 aaKnown RBP eCLIP7.29□□□□□ -1.24
USP28-206ENST00000538224 ZBED4O75132 1171 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 EIF3JO75822 258 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 GCNT3O95395 438 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 PRLRP16471 622 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 RFX1P22670 979 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 GUCY2CP25092 1073 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 PSMC2P35998 433 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 KLK7P49862 253 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 ZNF131P52739 623 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 SNRPFP62306 86 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 CYP4A11Q02928 519 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms