RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 DACT1Q9NYF0 836 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 HMG20BQ9P0W2 317 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 SUCOQ9UBS9 1254 aaKnown RBP7.52□□□□□ -1.21
USP28-202ENST00000535607 MAPK8IP1Q9UQF2 711 aa7.52□□□□□ -1.21
USP28-202ENST00000535607 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.52□□□□□ -1.21
USP28-202ENST00000535607 LAMB4A4D0S4 1761 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 A0A1B0GUL7 405 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 H3BQV1 296 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 AGRPO00253 132 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 EXOC5O00471 708 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 RNMTO43148 476 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 AP5Z1O43299 807 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 KLF4O43474 513 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 SLITRK5O94991 958 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 H2AFB1P0C5Y9 115 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 H2AFB2P0C5Z0 115 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 PNMA6AP0CW24 399 aaPredicted RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 PMS1P54277 932 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 HNRNPH2P55795 449 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 LRMPQ12912 555 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 CCDC144BQ3MJ40 725 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 OGFOD3Q6PK18 319 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 FAM178BQ8IXR5 827 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 EXOC4Q96A65 974 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 KREMEN1Q96MU8 473 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 JAKMIP1Q96N16 626 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 THUMPD2Q9BTF0 503 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 LSG1Q9H089 658 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 OSBPL5Q9H0X9 879 aaPredicted RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 TNKS2Q9H2K2 1166 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 C1GALT1Q9NS00 363 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 FAM86C1Q9NVL1 165 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 GEMIN8Q9NWZ8 242 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 FEZ2Q9UHY8 353 aaPredicted RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 EXOC6BQ9Y2D4 811 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 USP42Q9H9J4 1324 aaKnown RBP7.51□□□□□ -1.21
USP28-202ENST00000535607 ZNF831Q5JPB2 1677 aa7.51□□□□□ -1.21
USP28-202ENST00000535607 ERLIN1O75477 346 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 IGHA1P01876 353 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 HOXB7P09629 217 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 ACRP10323 421 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 CASQ1P31415 396 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 GTF2A1P52655 376 aaPredicted RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 TCEAL1Q15170 157 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 ZYXQ15942 572 aaKnown RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 CAMK4Q16566 473 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 ARHGAP29Q52LW3 1261 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 KIAA1211LQ6NV74 962 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 BLOC1S2Q6QNY1 142 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 C6orf15Q6UXA7 325 aaPredicted RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 SEZ6L2Q6UXD5 910 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 MCM10Q7L590 875 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 EEPD1Q7L9B9 569 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 MSL3Q8N5Y2 521 aaKnown RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 IL17REQ8NFR9 667 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 LEO1Q8WVC0 666 aaPredicted RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 RNF141Q8WVD5 230 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 ERCC4Q92889 916 aaPredicted RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 MPHOSPH8Q99549 860 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 BPIFA3Q9BQP9 254 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 GBP3Q9H0R5 595 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 DEF6Q9H4E7 631 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 SLC52A2Q9HAB3 445 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 ARFGAP3Q9NP61 516 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 DNAI1Q9UI46 699 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 FBXL21Q9UKT6 434 aa7.5□□□□□ -1.21
USP28-202ENST00000535607 LRRFIP2Q9Y608 721 aaKnown RBP7.5□□□□□ -1.21
USP28-202ENST00000535607 VGLL3A8MV65 326 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 FAM155AB1AL88 458 aaPredicted RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 WDR64B1ANS9 1081 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 UBOX5O94941 541 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 SMC2O95347 1197 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 CBX7O95931 251 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 IGLV1-40P01703 118 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 TP53P04637 393 aaPredicted RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 FSTP19883 344 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 USP8P40818 1118 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 KIR3DL1P43629 444 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 TAF7Q15545 349 aaPredicted RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 CPSF6Q16630 551 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP28-202ENST00000535607 ZSCAN26Q16670 478 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 NBPF12Q5TAG4 269 aaPredicted RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 HEATR6Q6AI08 1181 aaKnown RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 KRBA2Q6ZNG9 492 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 ADAT2Q7Z6V5 191 aaKnown RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 SLC51AQ86UW1 340 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 CLASRPQ8N2M8 674 aaKnown RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 IQUBQ8NA54 791 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 CCDC191Q8NCU4 936 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 SSH3Q8TE77 659 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 PPM1EQ8WY54 764 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 MKL1Q969V6 931 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 EVI5LQ96CN4 794 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 PSMG3-AS1Q96PY0 264 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 LLPHQ9BRT6 129 aaKnown RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 NRBP1Q9UHY1 535 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 TSPYL4Q9UJ04 414 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 ZNF214Q9UL59 606 aaPredicted RBP7.49□□□□□ -1.21
USP28-202ENST00000535607 ITGB4P16144 1822 aa7.49□□□□□ -1.21
USP28-202ENST00000535607 RGPD3A6NKT7 1758 aaPredicted RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms