RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, human

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-210	ENST00000534172	C11orf74	Q86VG3	221 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	CCDC146	Q8IYE0	955 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	E2F7	Q96AV8	911 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	PRDM16	Q9HAZ2	1276 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	DTL	Q9NZJ0	730 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	MCM8	Q9UJA3	840 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	CBLC	Q9ULV8	474 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	GLRX3	O76003	335 aa	Known RBP	4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	F2	P00734	622 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	CYP17A1	P05093	508 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	COL6A2	P12110	1019 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	HERVK_113	P62684	666 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	TUSC3	Q13454	348 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	XP32	Q5T750	250 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	BTBD8	Q5XKL5	378 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	CC2D1A	Q6P1N0	951 aa	Predicted RBP	4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	PRR23B	Q6ZRT6	265 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	OSTM1	Q86WC4	334 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	NME9	Q86XW9	330 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	ZZZ3	Q8IYH5	903 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	USP7	Q93009	1102 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	DIRC2	Q96SL1	478 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	FBLN5	Q9UBX5	448 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	TCEAL9	Q9UHQ7	104 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	COQ6	Q9Y2Z9	468 aa		4.64	□□□□□ -1.67
CSMD3-210	ENST00000534172	PEG3	Q9GZU2	1588 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	ALG1L2	C9J202	215 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	SLC27A2	O14975	620 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	KRT15	P19012	456 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	GLDC	P23378	1020 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	PML	P29590	882 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	TXK	P42681	527 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	GALK1	P51570	392 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	ADCY1	Q08828	1119 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	TSR2	Q969E8	191 aa	Known RBP	4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	MYH16	Q9H6N6	1097 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	KCNH7	Q9NS40	1196 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	N4BP3	O15049	544 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	NKRF	O15226	690 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	ALDH1L1	O75891	902 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	FAH	P16930	419 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	SDHA	P31040	664 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	LSS	P48449	732 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	FNTB	P49356	437 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	JAM2	P57087	298 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	CAP1	Q01518	475 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	ZNF460	Q14592	562 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	LDHD	Q86WU2	507 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	MZB1	Q8WU39	189 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	TMEM209	Q96SK2	561 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	MCOLN1	Q9GZU1	580 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	MTFR1L	Q9H019	292 aa		4.63	□□□□□ -1.67
CSMD3-210	ENST00000534172	PTPDC1	A2A3K4	754 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	RFXAP	O00287	272 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	TRAF5	O00463	557 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	MAN2B1	O00754	1011 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	KPNA6	O60684	536 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	AMY2A	P04746	511 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	AMY2B	P19961	511 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	ABHD17C	Q6PCB6	329 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	PTRH1	Q86Y79	214 aa	Known RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	EXOC8	Q8IYI6	725 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	AFAP1L2	Q8N4X5	818 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	CISD2	Q8N5K1	135 aa	Known RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	LEO1	Q8WVC0	666 aa	Predicted RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	DLG3	Q92796	817 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	KCNN1	Q92952	543 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	CCDC136	Q96JN2	1154 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	C8orf48	Q96LL4	319 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	TTC1	Q99614	292 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	IFT22	Q9H7X7	185 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	SMURF1	Q9HCE7	757 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	MBD1	Q9UIS9	605 aa	Predicted RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	APOBEC2	Q9Y235	224 aa	Known RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	WASHC2C	Q9Y4E1	1318 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	LTBP4	Q8N2S1	1624 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	NFIB	O00712	420 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	MAFG	O15525	162 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	PRC1	O43663	620 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	ASGR2	P07307	311 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	ENO2	P09104	434 aa	Predicted RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	MED14OS	P0DP75	135 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	CYP2C8	P10632	490 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	TTF1	Q15361	905 aa	Predicted RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	PAN2	Q504Q3	1202 aa	Known RBP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	GPR158	Q5T848	1215 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	B3GNT8	Q7Z7M8	397 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	EFHB	Q8N7U6	833 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	TTLL6	Q8N841	843 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	PCIF1	Q9H4Z3	704 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	CNTD2	Q9H8S5	307 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	RNF114	Q9Y508	228 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	B3GALT1	Q9Y5Z6	326 aa		4.62	□□□□□ -1.67
CSMD3-210	ENST00000534172	URB2	Q14146	1524 aa	Known RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	ZNF608	Q9ULD9	1512 aa	Predicted RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	ULK1	O75385	1050 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	KPNA1	P52294	538 aa	Predicted RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	IRX6	P78412	446 aa	Predicted RBP	4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms