RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CENPFP49454 3210 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 ASTN1O14525 1302 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 A0A087WWV3 80 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 BMP6P22004 513 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 CYP2C19P33261 490 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 GNPTABQ3T906 1256 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 LRRC15Q8TF66 581 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 ZNF333Q96JL9 665 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 EIF2AK1Q9BQI3 630 aaKnown RBP23.67■■□□□ 1.38
VPS28-212ENST00000530836 TCEAL9Q9UHQ7 104 aa23.67■■□□□ 1.38
VPS28-212ENST00000530836 ASB14A6NK59 587 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 ERCC5P28715 1186 aaPredicted RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 CACNB2Q08289 660 aaPredicted RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 EPHA7Q15375 998 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 STXBP2Q15833 593 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 MAP3K21Q5TCX8 1036 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 DHX40Q8IX18 779 aaKnown RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 UIMC1Q96RL1 719 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 HSD17B14Q9BPX1 270 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 BMP2KQ9NSY1 1161 aaPredicted RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 DNM3Q9UQ16 869 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 SYNGAP1Q96PV0 1343 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 ZNFX1Q9P2E3 1918 aaKnown RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 LOC102724159A0A0B4J2E5 919 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 MED24O75448 989 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 SPATA31C1P0DKV0 1188 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 CASP1P29466 404 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 ALDH5A1P51649 535 aaPredicted RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 PWP2Q15269 919 aaKnown RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 ECM1Q16610 540 aa23.66■■□□□ 1.38
VPS28-212ENST00000530836 ZNF658Q5TYW1 1059 aaPredicted RBP23.66■■□□□ 1.38
VPS28-212ENST00000530836 PVALEFA0A1B0GWK0 134 aa23.65■■□□□ 1.38
VPS28-212ENST00000530836 POTEB3A0JP26 581 aa23.65■■□□□ 1.38
VPS28-212ENST00000530836 EIF3JO75822 258 aaKnown RBP23.65■■□□□ 1.38
VPS28-212ENST00000530836 RHOBTB3O94955 611 aa23.65■■□□□ 1.38
VPS28-212ENST00000530836 SNAI1O95863 264 aaPredicted RBP23.65■■□□□ 1.38
VPS28-212ENST00000530836 PRKAR2AP13861 404 aaKnown RBP23.65■■□□□ 1.38
VPS28-212ENST00000530836 MCM6Q14566 821 aa23.65■■□□□ 1.38
VPS28-212ENST00000530836 POTEBQ6S5H4 581 aa23.65■■□□□ 1.38
VPS28-212ENST00000530836 AOPEPQ8N6M6 819 aa23.65■■□□□ 1.38
VPS28-212ENST00000530836 ZFP91Q96JP5 570 aaPredicted RBP23.65■■□□□ 1.38
VPS28-212ENST00000530836 EML1O00423 815 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 DHX15O43143 795 aaKnown RBP23.64■■□□□ 1.38
VPS28-212ENST00000530836 PPP1R2P41236 205 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 MYL5Q02045 173 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 ARMCX2Q7L311 632 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 MORC4Q8TE76 937 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 ABHD8Q96I13 439 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 PPP1R9BQ96SB3 815 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 UNC45AQ9H3U1 944 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 NRBP1Q9UHY1 535 aa23.64■■□□□ 1.38
VPS28-212ENST00000530836 PLA2G4BP0C869 781 aa23.63■■□□□ 1.37
VPS28-212ENST00000530836 ASIC1P78348 528 aa23.63■■□□□ 1.37
VPS28-212ENST00000530836 KRT76Q01546 638 aa23.63■■□□□ 1.37
VPS28-212ENST00000530836 RDM1Q8NG50 284 aa23.63■■□□□ 1.37
VPS28-212ENST00000530836 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.63■■□□□ 1.37
VPS28-212ENST00000530836 KLRC4O43908 158 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 EDNRBP24530 442 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 SFNP31947 248 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 JAK3P52333 1124 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 ITGB3BPQ13352 177 aaPredicted RBP23.62■■□□□ 1.37
VPS28-212ENST00000530836 MTFR1Q15390 333 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 KMT5BQ4FZB7 885 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 PRAMEF19Q5SWL8 479 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 UNC13DQ70J99 1090 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 MIER3Q7Z3K6 550 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 KCNK18Q7Z418 384 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 EXOC1Q9NV70 894 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 POTEFA5A3E0 1075 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 MYMKA6NI61 221 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 CHMP2AO43633 222 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 SLITRK3O94933 977 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 CYBAP13498 195 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 ICAM3P32942 547 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 POTEGQ6S5H5 508 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 TRPV1Q8NER1 839 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 ENOX1Q8TC92 643 aaKnown RBP23.62■■□□□ 1.37
VPS28-212ENST00000530836 PDLIM2Q96JY6 352 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 HMX1Q9NP08 348 aaPredicted RBP23.62■■□□□ 1.37
VPS28-212ENST00000530836 NFASCO94856 1347 aa23.62■■□□□ 1.37
VPS28-212ENST00000530836 SPATA31C2B4DYI2 1134 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 E9PMD0 336 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 MYCP01106 439 aaPredicted RBP23.61■■□□□ 1.37
VPS28-212ENST00000530836 CCL5P13501 91 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 STIM1Q13586 685 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 DHX8Q14562 1220 aaKnown RBP23.61■■□□□ 1.37
VPS28-212ENST00000530836 ZNF746Q6NUN9 644 aaPredicted RBP23.61■■□□□ 1.37
VPS28-212ENST00000530836 SARM1Q6SZW1 724 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 SYT2Q8N9I0 419 aaPredicted RBP23.61■■□□□ 1.37
VPS28-212ENST00000530836 DDX12PQ92771 950 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 NACC1Q96RE7 527 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 SENP7Q9BQF6 1050 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 UNC93B1Q9H1C4 597 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 ABHD16BQ9H3Z7 469 aa23.61■■□□□ 1.37
VPS28-212ENST00000530836 EYA4O95677 639 aa23.6■■□□□ 1.37
VPS28-212ENST00000530836 P4HBP07237 508 aaKnown RBP23.6■■□□□ 1.37
VPS28-212ENST00000530836 ZNF865P0CJ78 1059 aaPredicted RBP23.6■■□□□ 1.37
VPS28-212ENST00000530836 PDE4DQ08499 809 aa23.6■■□□□ 1.37
VPS28-212ENST00000530836 PSMD2Q13200 908 aa23.6■■□□□ 1.37
VPS28-212ENST00000530836 GIMAP8Q8ND71 665 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms