RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, human

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USH1C-208	ENST00000529563	REC8	O95072	547 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	CHRNA1	P02708	482 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	RPLP2	P05387	115 aa	Known RBP	13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	KCNA2	P16389	499 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	ITGB5	P18084	799 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	IBSP	P21815	317 aa	Predicted RBP	13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	LIFR	P42702	1097 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	NAPA	P54920	295 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	MKRN4P	Q13434	485 aa	Predicted RBP	13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	BTG3	Q14201	252 aa	Predicted RBP	13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	CSPP1	Q1MSJ5	1256 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	TCEAL5	Q5H9L2	206 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	IER5	Q5VY09	327 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	CREB3L3	Q68CJ9	461 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	FANCB	Q8NB91	859 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	UIMC1	Q96RL1	719 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	OSBPL7	Q9BZF2	842 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	JADE2	Q9NQC1	790 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	SLC9A2	Q9UBY0	812 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	CDY2A	Q9Y6F7	541 aa		13.89	□□□□□ -0.19
USH1C-208	ENST00000529563	GSTTP1	A0A1W2PQM5	241 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	IL9	P15248	144 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	ZNF76	P36508	570 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	MRPS6	P82932	125 aa	Known RBP	13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	FGD1	P98174	961 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	LPIN1	Q14693	890 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	TSHZ1	Q6ZSZ6	1077 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	TMTC3	Q6ZXV5	915 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	FAM178B	Q8IXR5	827 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	UBIAD1	Q9Y5Z9	338 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	ADGRA3	Q8IWK6	1321 aa		13.88	□□□□□ -0.19
USH1C-208	ENST00000529563	NCK2	O43639	380 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	RB1	P06400	928 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	ALAD	P13716	330 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	INSRR	P14616	1297 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	BMPR1A	P36894	532 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	ADCY7	P51828	1080 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	ADAM17	P78536	824 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	RPAIN	Q86UA6	219 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	PPP2R3C	Q969Q6	453 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	PABPC5	Q96DU9	382 aa	Known RBP	13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	LSG1	Q9H089	658 aa	Known RBP	13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	IGFLR1	Q9H665	355 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	RBM28	Q9NW13	759 aa	Known RBP	13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	TCEAL9	Q9UHQ7	104 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	LRFN2	Q9ULH4	789 aa		13.87	□□□□□ -0.19
USH1C-208	ENST00000529563	BRWD1	Q9NSI6	2320 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	GRXCR2	A6NFK2	248 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	PI4K2B	G5E9Z4	385 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	ENPP3	O14638	875 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	BACH1	O14867	736 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	GPR37L1	O60883	481 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	STAG3L1	P0CL83	205 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	CD52	P31358	61 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	STAT5B	P51692	787 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	TMEM62	Q0P6H9	643 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	PAK2	Q13177	524 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	RTN1	Q16799	776 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	FBXO47	Q5MNV8	452 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	MXRA8	Q9BRK3	442 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	FTHL17	Q9BXU8	183 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	LMAN2L	Q9H0V9	348 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	KCNH7	Q9NS40	1196 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	GINS2	Q9Y248	185 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	TRPV2	Q9Y5S1	764 aa		13.86	□□□□□ -0.19
USH1C-208	ENST00000529563	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	DDX39A	O00148	427 aa	Known RBP	13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	ZBTB43	O43298	467 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	FOS	P01100	380 aa	Predicted RBP	13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	ACTR2	P61160	394 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	MGAT3	Q09327	533 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	CLUL1	Q15846	466 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	PAN2	Q504Q3	1202 aa	Known RBP	13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	SPOUT1	Q5T280	376 aa	Known RBP	13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	FAM160B1	Q5W0V3	765 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	WWC2	Q6AWC2	1192 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	PPP1R18	Q6NYC8	613 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	NEK9	Q8TD19	979 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	PGBD1	Q96JS3	809 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	NEK1	Q96PY6	1258 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	GLT8D2	Q9H1C3	349 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	CD320	Q9NPF0	282 aa		13.85	□□□□□ -0.19
USH1C-208	ENST00000529563	NLRC5	Q86WI3	1866 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	POTEB3	A0JP26	581 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	SMCO2	A6NFE2	343 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	GOLGA8A	A7E2F4	631 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	GOLGA8B	A8MQT2	603 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	GRM6	O15303	877 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	NFX1	Q12986	1120 aa	Known RBP	13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	PLCB4	Q15147	1175 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	NECTIN1	Q15223	517 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	CEP55	Q53EZ4	464 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	MARCH8	Q5T0T0	291 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	POTEB	Q6S5H4	581 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	SGMS1	Q86VZ5	419 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	NPAS4	Q8IUM7	802 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	CKAP2L	Q8IYA6	745 aa		13.84	□□□□□ -0.19
USH1C-208	ENST00000529563	TRAPPC12	Q8WVT3	735 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms