RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 TMEM260Q9NX78 707 aa13.09□□□□□ -0.31
USF1-208ENST00000528768 DDX25Q9UHL0 483 aaKnown RBP13.09□□□□□ -0.31
USF1-208ENST00000528768 RABGAP1Q9Y3P9 1069 aa13.09□□□□□ -0.31
USF1-208ENST00000528768 PCDHA1Q9Y5I3 950 aa13.09□□□□□ -0.31
USF1-208ENST00000528768 FRMPD3Q5JV73 1810 aa13.09□□□□□ -0.31
USF1-208ENST00000528768 HOXC6P09630 235 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 BMP3P12645 472 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 CNGA1P29973 690 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 CDC25AP30304 524 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 PRCPP42785 496 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 CLK2P49760 499 aaKnown RBP13.08□□□□□ -0.32
USF1-208ENST00000528768 COPB1P53618 953 aaKnown RBP13.08□□□□□ -0.32
USF1-208ENST00000528768 SNX17Q15036 470 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 CDC37Q16543 378 aaPredicted RBP13.08□□□□□ -0.32
USF1-208ENST00000528768 QRICH1Q2TAL8 776 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 NAALADL2Q58DX5 795 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 HSP90AA4PQ58FG1 418 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 TCP11X2Q5H9J9 407 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 E4F1Q66K89 784 aaPredicted RBP13.08□□□□□ -0.32
USF1-208ENST00000528768 TTBK2Q6IQ55 1244 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 SLC39A5Q6ZMH5 540 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 RASGRP2Q7LDG7 609 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 FBXO11Q86XK2 927 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 POTEDQ86YR6 584 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 SLFN12Q8IYM2 578 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 SMYD4Q8IYR2 804 aaPredicted RBP13.08□□□□□ -0.32
USF1-208ENST00000528768 BADQ92934 168 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 IQCDQ96DY2 449 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 MTRQ99707 1265 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 C1QTNF1Q9BXJ1 281 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 PORCNQ9H237 461 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 PDCL3Q9H2J4 239 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 PRDM5Q9NQX1 630 aaPredicted RBP13.08□□□□□ -0.32
USF1-208ENST00000528768 INTS13Q9NVM9 706 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 IVNS1ABPQ9Y6Y0 642 aa13.08□□□□□ -0.32
USF1-208ENST00000528768 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.07□□□□□ -0.32
USF1-208ENST00000528768 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.07□□□□□ -0.32
USF1-208ENST00000528768 PP2D1A8MPX8 630 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 F5H6K3 240 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 KIF20AO95235 890 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 CCNE1P24864 410 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 SLC16A2P36021 539 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 KLRC3Q07444 240 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 KRT31Q15323 416 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 SYDE2Q5VT97 1194 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 ERMNQ8TAM6 284 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 SNX29Q8TEQ0 813 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 P2RX5Q93086 422 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 RNPC3Q96LT9 517 aaKnown RBP13.07□□□□□ -0.32
USF1-208ENST00000528768 MED15Q96RN5 788 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 PLIN2Q99541 437 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 TRIM9Q9C026 710 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 EHMT1Q9H9B1 1298 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 GOPCQ9HD26 462 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 PCDHA12Q9UN75 941 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 GREB1LQ9C091 1923 aaPredicted RBP13.07□□□□□ -0.32
USF1-208ENST00000528768 PHLPP2Q6ZVD8 1323 aa13.07□□□□□ -0.32
USF1-208ENST00000528768 ATAD5Q96QE3 1844 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 CDH23Q9H251 3354 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 A0A1W2PQC6 194 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 SPDYE3A6NKU9 549 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 TBX3O15119 743 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 CTIFO43310 598 aaKnown RBP13.06□□□□□ -0.32
USF1-208ENST00000528768 KLRC4O43908 158 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 CCDC175P0C221 793 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 SLURP2P0DP57 97 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 ETF1P62495 437 aaKnown RBP13.06□□□□□ -0.32
USF1-208ENST00000528768 MRPS5P82675 430 aaKnown RBP13.06□□□□□ -0.32
USF1-208ENST00000528768 Q3C1V9 767 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 UNC13DQ70J99 1090 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 CLEC10AQ8IUN9 316 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 TMTC1Q8IUR5 882 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 CREBRFQ8IUR6 639 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 KCTD17Q8N5Z5 321 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 TC2NQ8N9U0 490 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 LARP4BQ92615 738 aaKnown RBP13.06□□□□□ -0.32
USF1-208ENST00000528768 ASB2Q96Q27 587 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 GAS2L1Q99501 681 aaPredicted RBP13.06□□□□□ -0.32
USF1-208ENST00000528768 TSG101Q99816 390 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 PAGR1Q9BTK6 254 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 NUP58Q9BVL2 599 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 SRRTQ9BXP5 876 aaKnown RBP13.06□□□□□ -0.32
USF1-208ENST00000528768 DNAJC18Q9H819 358 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 PDLIM7Q9NR12 457 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 THEGQ9P2T0 379 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 GDAQ9Y2T3 454 aa13.06□□□□□ -0.32
USF1-208ENST00000528768 CYP3A7-CYP3A51PA0A087WV96 503 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 FAM196BA6NMK8 535 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 USP27XA6NNY8 438 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 MFAP3LO75121 409 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 SLU7O95391 586 aaKnown RBP13.05□□□□□ -0.32
USF1-208ENST00000528768 TDP2O95551 362 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 GH2P01242 217 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 CYP3A7P24462 503 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 DNAJB2P25686 324 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 PBX1P40424 430 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 DNM2P50570 870 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 GRIN2CQ14957 1233 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 UBE2SQ16763 222 aa13.05□□□□□ -0.32
USF1-208ENST00000528768 FKBP15Q5T1M5 1219 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms