RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TTLL6Q8N841 843 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 WDR66Q8TBY9 1149 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 SDR42E1Q8WUS8 393 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 TMX3Q96JJ7 454 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 MDFIQ99750 246 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 RIOK1Q9BRS2 568 aaKnown RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 TM6SF1Q9BZW5 370 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 MCOLN1Q9GZU1 580 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 ADAM19Q9H013 955 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 TMX4Q9H1E5 349 aaPredicted RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 DBNDD1Q9H9R9 158 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 CBX8Q9HC52 389 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 INCENPQ9NQS7 918 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 DNAJB12Q9NXW2 375 aaKnown RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 CACNA2D2Q9NY47 1150 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 G3BP2Q9UN86 482 aaKnown RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 FAN1Q9Y2M0 1017 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 CD2APQ9Y5K6 639 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 TACC3Q9Y6A5 838 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 SLC4A4Q9Y6R1 1079 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 FAM205AQ6ZU69 1335 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 SALL1Q9NSC2 1324 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 CYP2D7A0A087X1C5 515 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 F8W031 263 aaPredicted RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 SMIM22K7EJ46 135 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 ECE2O60344 883 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 SMNDC1O75940 238 aaKnown RBP eCLIP4.85□□□□□ -1.63
CD44-226ENST00000527889 ESRRAP11474 423 aaPredicted RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 EPXP11678 715 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 HOXB4P17483 251 aaPredicted RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 KCNA3P22001 575 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 GUCY2CP25092 1073 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 POLD1P28340 1107 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 CDK8P49336 464 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 MCM2P49736 904 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 TOB2Q14106 344 aaPredicted RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 KRT32Q14532 448 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 ALX1Q15699 326 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 AOC3Q16853 763 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 IMMTQ16891 758 aaKnown RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 SLC4A8Q2Y0W8 1093 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 MFSD14BQ5SR56 506 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 Q6ZUG5 572 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 CHST3Q7LGC8 479 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 CCDC83Q8IWF9 413 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 IFNL3Q8IZI9 196 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 GOLGA6L1Q8N7Z2 621 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 SECISBP2LQ93073 1101 aaKnown RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 FAM122AQ96E09 287 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 NEK1Q96PY6 1258 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 EYA3Q99504 573 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 TM9SF2Q99805 663 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 IER2Q9BTL4 223 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 ZC3H12CQ9C0D7 883 aaKnown RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 COA1Q9GZY4 146 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 NAPBQ9H115 298 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 CTNNA3Q9UI47 895 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 GDF2Q9UK05 429 aaPredicted RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 LIMCH1Q9UPQ0 1083 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 PLAAQ9Y263 795 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 MROH7-TTC4A0A0A0MT08 1334 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 NEDD4P46934 1319 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 RBBP6Q7Z6E9 1792 aaKnown RBP4.85□□□□□ -1.63
CD44-226ENST00000527889 DOCK5Q9H7D0 1870 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 MCM3APO60318 1980 aa4.85□□□□□ -1.63
CD44-226ENST00000527889 CACNA1GO43497 2377 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 DOCK3Q8IZD9 2030 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 TRPM7Q96QT4 1865 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ZMYM6O95789 1325 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 B4E1Z4 1266 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ZNF213O14771 459 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 PPIP5K2O43314 1243 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 FAM153BP0C7A2 387 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 CYP2D6P10635 497 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 PTPRAP18433 802 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 GNAT2P19087 354 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 EIF2AK2P19525 551 aaKnown RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 POU3F3P20264 500 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 ADH6P28332 368 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 DDIT3P35638 169 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 GSK3AP49840 483 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ANTXR2P58335 489 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ST3GAL1Q11201 340 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 STK3Q13188 491 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 CUL4AQ13619 759 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 PCSK7Q16549 785 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ME3Q16798 604 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 C21orf62-AS1Q17RA5 79 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 FOXD4L6Q3SYB3 417 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 TM4SF20Q53R12 229 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 CCDC93Q567U6 631 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 RRP12Q5JTH9 1297 aaKnown RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 FOXD4L3Q6VB84 417 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 FAM43BQ6ZT52 329 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 CYB5R4Q7L1T6 521 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 SYT9Q86SS6 491 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 RAB11FIP4Q86YS3 637 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 JAMLQ86YT9 394 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 MB21D2Q8IYB1 491 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 CERS5Q8N5B7 392 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms