RNA–Protein interactions for RNA: ENST00000527323.5

CAPN1-208, Transcript of calpain 1, human

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-208	ENST00000527323	COBLL1	Q53SF7	1204 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	NELFCD	Q8IXH7	590 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	CASKIN2	Q8WXE0	1202 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	PNMA5	Q96PV4	448 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	MTFR1L	Q9H019	292 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	COL4A3BP	Q9Y5P4	624 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323		A0A1B0GUL6	1792 aa		13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	ASTN2	O75129	1339 aa	Predicted RBP	13.73	□□□□□ -0.21
CAPN1-208	ENST00000527323	FKBP3	Q00688	224 aa	Known RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	KLHL30	Q0D2K2	578 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	PTPRO	Q16827	1216 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	HGSNAT	Q68CP4	663 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	STYK1	Q6J9G0	422 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	EDEM3	Q9BZQ6	932 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	RIC8A	Q9NPQ8	531 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	MPHOSPH10	O00566	681 aa	Known RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	MEFV	O15553	781 aa	Predicted RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	CRK	P46108	304 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	PRELP	P51888	382 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	RHBDL3	P58872	404 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	TNNC1	P63316	161 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	CDC42EP5	Q6NZY7	148 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	KDM7A	Q6ZMT4	941 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	LRRC55	Q6ZSA7	311 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	UIMC1	Q96RL1	719 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	EYA3	Q99504	573 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	NUDT12	Q9BQG2	462 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	SPZ1	Q9BXG8	430 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	NUCKS1	Q9H1E3	243 aa	Known RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	EPN3	Q9H201	632 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	PPAN	Q9NQ55	473 aa	Known RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	CEP72	Q9P209	647 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	PLAA	Q9Y263	795 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	ADAMTSL1	Q8N6G6	1762 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	BRCA2	P51587	3418 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323		E7EVH7	732 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	MYO1F	O00160	1098 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	KCNK3	O14649	394 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	TDP2	O95551	362 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	NAB2	Q15742	525 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	DALRD3	Q5D0E6	543 aa	Known RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	RAD54L	Q92698	747 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	COA7	Q96BR5	231 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	LRRC27	Q9C0I9	530 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	ZHX3	Q9H4I2	956 aa		13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.72	□□□□□ -0.21
CAPN1-208	ENST00000527323	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	3e-6	■■■■■ 38.5
CAPN1-208	ENST00000527323	TLR2	O60603	784 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	PPP1R37	O75864	691 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	RASA1	P20936	1047 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	CDC37	Q16543	378 aa	Predicted RBP	13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	ODF2	Q5BJF6	829 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	NAA35	Q5VZE5	725 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	MIGA2	Q7L4E1	593 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	FAM133A	Q8N9E0	248 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	WHAMM	Q8TF30	809 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	ATP6V1G3	Q96LB4	118 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	ZNF287	Q9HBT7	754 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	ABCB11	O95342	1321 aa		13.71	□□□□□ -0.21
CAPN1-208	ENST00000527323	RAD51C	O43502	376 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	SLC37A4	O43826	429 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	TNNI2	P48788	182 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	RPS6KA1	Q15418	735 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	ARHGAP27	Q6ZUM4	889 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	KCNK18	Q7Z418	384 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	ZNF473	Q8WTR7	871 aa	Known RBP	13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	CCT8L2	Q96SF2	557 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323	PACSIN1	Q9BY11	444 aa		13.71	□□□□□ -0.22
CAPN1-208	ENST00000527323		A0A087X0T9	212 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	CEP104	O60308	925 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	FAM228B	P0C875	321 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	IFT88	Q13099	833 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	PSMD2	Q13200	908 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	DACT2	Q5SW24	774 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	SPATS2	Q86XZ4	545 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	CEP89	Q96ST8	783 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	YY1AP1	Q9H869	796 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	PANK4	Q9NVE7	773 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	GRID2IP	A4D2P6	1211 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	MDH1	P40925	334 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	PTGER2	P43116	358 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	ASIC2	Q16515	512 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	SLC18A3	Q16572	532 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	PTGIS	Q16647	500 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	FAM26F	Q5R3K3	315 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	MEI1	Q5TIA1	1274 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	SAMD7	Q7Z3H4	446 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	CCDC91	Q7Z6B0	441 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	PIK3R5	Q8WYR1	880 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	MTMR9	Q96QG7	549 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	DDTL	A6NHG4	134 aa	Predicted RBP	13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	GDF11	O95390	407 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	COASY	Q13057	564 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	NLRP14	Q86W24	1093 aa		13.7	□□□□□ -0.22
CAPN1-208	ENST00000527323	GJA10	Q969M2	543 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 42 ms